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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 4
  • cytosol 2
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc11g005370.1.1 cytosol, cytosol, nucleus, nucleus
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400009801 Potato cytosol 100.0 100.0
Solyc06g084350.2.1 Tomato cytosol 98.92 98.92
AT1G03330.1 Thale cress cytosol 92.47 92.47
VIT_07s0104g00560.t01 Wine grape cytosol 95.7 91.75
Bra030529.1-P Field mustard cytosol 91.4 91.4
KRG95475 Soybean nucleus 91.4 91.4
KRH67157 Soybean cytosol 91.4 91.4
KXG30280 Sorghum cytosol 91.4 91.4
CDX89900 Canola endoplasmic reticulum, extracellular 92.47 81.13
GSMUA_Achr8P06050_001 Banana extracellular 91.4 80.95
Zm00001d024593_P001 Maize cytosol 60.22 70.0
CDX86679 Canola cytosol 91.4 68.55
CDY15459 Canola cytosol 91.4 65.89
GSMUA_Achr11P... Banana cytosol 90.32 55.26
Zm00001d024591_P001 Maize cytosol, mitochondrion, nucleus 40.86 26.95
Protein Annotations
MapMan:16.4.3.2Gene3D:2.30.30.100GO:GO:0000398GO:GO:0000932GO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005681GO:GO:0005688GO:GO:0005737GO:GO:0006139GO:GO:0006397GO:GO:0008150
GO:GO:0008152GO:GO:0008380GO:GO:0009987GO:GO:0030529GO:GO:0046540GO:GO:0071011
GO:GO:0071013GO:GO:1990726UniProt:K4CUX3InterPro:LSM_dom_euk/arcInterPro:LSM_dom_sfPFAM:PF01423
PIRSF:PIRSF016394PANTHER:PTHR13829SMART:SM00651SUPFAM:SSF50182EnsemblPlantsGene:Solyc09g072970.2EnsemblPlants:Solyc09g072970.2.1
InterPro:U6_snRNA_Lsm2UniParc:UPI000276B185::::
Description
Sm-like protein LSM2 [Source:UniProtKB/TrEMBL;Acc:K4CUX3]
Coordinates
chr9:-:65636338..65641538
Molecular Weight (calculated)
10794.0 Da
IEP (calculated)
7.607
GRAVY (calculated)
-0.360
Length
93 amino acids
Sequence
(BLAST)
1: MLFFSYFKDL VGREVTVELK NDLAIRGTLH SVDQYLNIKL ENTRVVDEDK YPHMRSVRNC FIRGSVVRYV QLPPDGVDIE LLHDATRREA RGG
Best Arabidopsis Sequence Match ( AT1G03330.1 )
(BLAST)
1: MLFFSYFKDL VGQEVTVELK NDLAIRGTLH SVDQYLNIKL ENTRVVDQDK YPHMLSVRNC FIRGSVVRYV QLPKDGVDVD LLHDAARREA RGG
Arabidopsis Description
LSM2Sm-like protein LSM2 [Source:UniProtKB/TrEMBL;Acc:A0A178W785]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.