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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 4
  • cytosol 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:secretory
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra003705.1-P cytosol, nucleus
Bra008283.1-P cytosol, nucleus
Bra015717.1-P cytosol, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G03330.1 Bra003705.1-P AT1G76860.1 23221597
AT1G03330.1 Bra008283.1-P AT1G76860.1 23221597
AT1G03330.1 Bra015717.1-P AT1G76860.1 23221597
AT1G03330.1 Bra003705.1-P AT1G76860.1 23221597
AT1G03330.1 Bra008283.1-P AT1G76860.1 23221597
AT1G03330.1 Bra015717.1-P AT1G76860.1 23221597
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT1G03330.1 Thale cress cytosol 96.77 96.77
PGSC0003DMT400009801 Potato cytosol 91.4 91.4
Solyc09g072970.2.1 Tomato cytosol 91.4 91.4
KXG30280 Sorghum cytosol 90.32 90.32
Solyc06g084350.2.1 Tomato cytosol 90.32 90.32
VIT_07s0104g00560.t01 Wine grape cytosol 91.4 87.63
KRG95475 Soybean nucleus 87.1 87.1
KRH67157 Soybean cytosol 87.1 87.1
PGSC0003DMT400051614 Potato cytosol 78.49 86.9
GSMUA_Achr8P06050_001 Banana extracellular 90.32 80.0
CDX86679 Canola cytosol 100.0 75.0
CDY15459 Canola cytosol 100.0 72.09
Zm00001d024593_P001 Maize cytosol 59.14 68.75
GSMUA_Achr11P... Banana cytosol 90.32 55.26
Zm00001d024591_P001 Maize cytosol, mitochondrion, nucleus 41.94 27.66
Protein Annotations
MapMan:16.4.3.2Gene3D:2.30.30.100EnsemblPlantsGene:Bra030529EnsemblPlants:Bra030529.1EnsemblPlants:Bra030529.1-PGO:GO:0000398
GO:GO:0000932GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005681GO:GO:0005688GO:GO:0005737
GO:GO:0005829GO:GO:0006139GO:GO:0006397GO:GO:0008150GO:GO:0008152GO:GO:0008380
GO:GO:0009987GO:GO:0030529GO:GO:0046540InterPro:LSM_dom_euk/arcInterPro:LSM_dom_sfUniProt:M4EP09
PFAM:PF01423PIRSF:PIRSF016394PANTHER:PTHR13829SMART:SM00651SUPFAM:SSF50182InterPro:U6_snRNA_Lsm2
UniParc:UPI0002545A9A:::::
Description
AT1G03330 (E=2e-047) | small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative
Coordinates
chrA08:+:21447746..21448644
Molecular Weight (calculated)
10661.8 Da
IEP (calculated)
6.791
GRAVY (calculated)
-0.169
Length
93 amino acids
Sequence
(BLAST)
1: MLFFSYFKDL VGQEVTVELK NDLAIRGTLH SVDQYLNIKL ENTRVVDQDK FPHMLSVRNC FIRGSVVRYV QLPPDGVDVD LLHDAARREA RGA
Best Arabidopsis Sequence Match ( AT1G03330.1 )
(BLAST)
1: MLFFSYFKDL VGQEVTVELK NDLAIRGTLH SVDQYLNIKL ENTRVVDQDK YPHMLSVRNC FIRGSVVRYV QLPKDGVDVD LLHDAARREA RGG
Arabidopsis Description
LSM2Sm-like protein LSM2 [Source:UniProtKB/TrEMBL;Acc:A0A178W785]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.