Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d042725_P001 | cytosol, cytosol, nucleus, nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G03330.1 | Thale cress | cytosol | 70.0 | 60.22 |
| PGSC0003DMT400009801 | Potato | cytosol | 70.0 | 60.22 |
| Solyc09g072970.2.1 | Tomato | cytosol | 70.0 | 60.22 |
| Bra030529.1-P | Field mustard | cytosol | 68.75 | 59.14 |
| Solyc06g084350.2.1 | Tomato | cytosol | 68.75 | 59.14 |
| VIT_07s0104g00560.t01 | Wine grape | cytosol | 70.0 | 57.73 |
| KRG95475 | Soybean | nucleus | 65.0 | 55.91 |
| KRH67157 | Soybean | cytosol | 65.0 | 55.91 |
| GSMUA_Achr8P06050_001 | Banana | extracellular | 71.25 | 54.29 |
| PGSC0003DMT400051614 | Potato | cytosol | 56.25 | 53.57 |
| CDX89900 | Canola | endoplasmic reticulum, extracellular | 68.75 | 51.89 |
| CDX86679 | Canola | cytosol | 68.75 | 44.35 |
| CDY15459 | Canola | cytosol | 68.75 | 42.64 |
| GSMUA_Achr11P... | Banana | cytosol | 71.25 | 37.5 |
| Zm00001d024591_P001 | Maize | cytosol, mitochondrion, nucleus | 13.75 | 7.8 |
Protein Annotations
| MapMan:16.4.3.2 | Gene3D:2.30.30.100 | UniProt:A0A1D6J0C6 | ProteinID:AQK41539.1 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0030529 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | PFAM:PF01423 | PANTHER:PTHR13829 | SMART:SM00651 |
| SUPFAM:SSF50182 | InterPro:U6_snRNA_Lsm2 | UniParc:UPI000842E404 | EnsemblPlantsGene:Zm00001d024593 | EnsemblPlants:Zm00001d024593_P001 | EnsemblPlants:Zm00001d024593_T001 |
Description
Sm-like protein LSM2
Coordinates
chr10:-:79588608..79589422
Molecular Weight (calculated)
9228.5 Da
IEP (calculated)
6.776
GRAVY (calculated)
0.135
Length
80 amino acids
Sequence
(BLAST)
(BLAST)
1: MLFFSYFKEL VGKEVTVELK NDLAIRGTLH SVDQYLNIKL ENTRVVDQDK YPHMVCLLLC LIVMPAQNDR IHALQLNPIG
1: MLFFSYFKDL VGQEVTVELK NDLAIRGTLH SVDQYLNIKL ENTRVVDQDK YPHMLSVRNC FIRGSVVRYV QLPKDGVDVD LLHDAARREA RGG
Arabidopsis Description
LSM2Sm-like protein LSM2 [Source:UniProtKB/TrEMBL;Acc:A0A178W785]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.