Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030529.1-P | Field mustard | cytosol | 72.09 | 100.0 |
| AT1G03330.1 | Thale cress | cytosol | 69.77 | 96.77 |
| PGSC0003DMT400009801 | Potato | cytosol | 65.89 | 91.4 |
| Solyc09g072970.2.1 | Tomato | cytosol | 65.89 | 91.4 |
| KXG30280 | Sorghum | cytosol | 65.12 | 90.32 |
| Solyc06g084350.2.1 | Tomato | cytosol | 65.12 | 90.32 |
| VIT_07s0104g00560.t01 | Wine grape | cytosol | 65.89 | 87.63 |
| KRG95475 | Soybean | nucleus | 62.79 | 87.1 |
| KRH67157 | Soybean | cytosol | 62.79 | 87.1 |
| PGSC0003DMT400051614 | Potato | cytosol | 56.59 | 86.9 |
| CDX89900 | Canola | endoplasmic reticulum, extracellular | 69.77 | 84.91 |
| CDX86679 | Canola | cytosol | 77.52 | 80.65 |
| GSMUA_Achr8P06050_001 | Banana | extracellular | 65.12 | 80.0 |
| Zm00001d024593_P001 | Maize | cytosol | 42.64 | 68.75 |
| GSMUA_Achr11P... | Banana | cytosol | 67.44 | 57.24 |
| Zm00001d024591_P001 | Maize | cytosol, mitochondrion, nucleus | 31.01 | 28.37 |
Protein Annotations
| MapMan:16.4.3.2 | Gene3D:2.30.30.100 | GO:A0A078FRE4 | UniProt:A0A078FRE4 | EnsemblPlants:CDY15459 | ProteinID:CDY15459 |
| ProteinID:CDY15459.1 | GO:GO:0000398 | GO:GO:0000932 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 |
| GO:GO:0005688 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008380 | GO:GO:0009987 | GO:GO:0030529 | GO:GO:0046540 | EnsemblPlantsGene:GSBRNA2T00089627001 | InterPro:LSM_dom_euk/arc |
| InterPro:LSM_dom_sf | PFAM:PF01423 | PIRSF:PIRSF016394 | PANTHER:PTHR13829 | SMART:SM00651 | SUPFAM:SSF50182 |
| InterPro:U6_snRNA_Lsm2 | UniParc:UPI0004EE8A61 | : | : | : | : |
Description
BnaA08g27430DSm-like protein LSM2 [Source:UniProtKB/TrEMBL;Acc:A0A078FRE4]
Coordinates
chrLK032055:-:118250..119467
Molecular Weight (calculated)
14743.7 Da
IEP (calculated)
6.786
GRAVY (calculated)
-0.345
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVTEAQYCK VSQLFAKLLN NEQREGGRKE SAEEKIMLFF SYFKDLVGQE VTVELKNDLA IRGTLHSVDQ YLNIKLENTR VVDQDKFPHM LSVRNCFIRG
101: SVVRYVQLPP DGVDVDLLHD AARREARGA
101: SVVRYVQLPP DGVDVDLLHD AARREARGA
1: MLFFSYFKDL VGQEVTVELK NDLAIRGTLH SVDQYLNIKL ENTRVVDQDK YPHMLSVRNC FIRGSVVRYV QLPKDGVDVD LLHDAARREA RGG
Arabidopsis Description
LSM2Sm-like protein LSM2 [Source:UniProtKB/TrEMBL;Acc:A0A178W785]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.