Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030529.1-P | Field mustard | cytosol | 96.77 | 96.77 |
| KXG30280 | Sorghum | cytosol | 92.47 | 92.47 |
| PGSC0003DMT400009801 | Potato | cytosol | 92.47 | 92.47 |
| Solyc09g072970.2.1 | Tomato | cytosol | 92.47 | 92.47 |
| Solyc06g084350.2.1 | Tomato | cytosol | 91.4 | 91.4 |
| VIT_07s0104g00560.t01 | Wine grape | cytosol | 92.47 | 88.66 |
| KRG95475 | Soybean | nucleus | 88.17 | 88.17 |
| KRH67157 | Soybean | cytosol | 88.17 | 88.17 |
| PGSC0003DMT400051614 | Potato | cytosol | 79.57 | 88.1 |
| CDX89900 | Canola | endoplasmic reticulum, extracellular | 97.85 | 85.85 |
| GSMUA_Achr8P06050_001 | Banana | extracellular | 91.4 | 80.95 |
| CDX86679 | Canola | cytosol | 96.77 | 72.58 |
| Zm00001d024593_P001 | Maize | cytosol | 60.22 | 70.0 |
| CDY15459 | Canola | cytosol | 96.77 | 69.77 |
| GSMUA_Achr11P... | Banana | cytosol | 90.32 | 55.26 |
| Zm00001d024591_P001 | Maize | cytosol, mitochondrion, nucleus | 43.01 | 28.37 |
Protein Annotations
| MapMan:16.4.3.2 | Gene3D:2.30.30.100 | EntrezGene:839526 | UniProt:A0A178W785 | ProteinID:AAC72111.1 | ProteinID:AEE27560.1 |
| ArrayExpress:AT1G03330 | EnsemblPlantsGene:AT1G03330 | RefSeq:AT1G03330 | TAIR:AT1G03330 | RefSeq:AT1G03330-TAIR-G | EnsemblPlants:AT1G03330.1 |
| TAIR:AT1G03330.1 | EMBL:AY085777 | Unigene:At.42549 | EMBL:BT025569 | GO:GO:0000398 | GO:GO:0000932 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0005688 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 |
| GO:GO:0030529 | GO:GO:0046540 | GO:GO:0071011 | GO:GO:0071013 | GO:GO:1990726 | InterPro:LSM_dom_euk/arc |
| InterPro:LSM_dom_sf | RefSeq:NP_563682.1 | ProteinID:OAP14026.1 | PFAM:PF01423 | PIRSF:PIRSF016394 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR13829 |
| UniProt:Q1H595 | SMART:SM00651 | SUPFAM:SSF50182 | InterPro:U6_snRNA_Lsm2 | UniParc:UPI0000162C2A | : |
Description
LSM2Sm-like protein LSM2 [Source:UniProtKB/TrEMBL;Acc:A0A178W785]
Coordinates
chr1:-:817934..819563
Molecular Weight (calculated)
10694.9 Da
IEP (calculated)
7.606
GRAVY (calculated)
-0.261
Length
93 amino acids
Sequence
(BLAST)
(BLAST)
1: MLFFSYFKDL VGQEVTVELK NDLAIRGTLH SVDQYLNIKL ENTRVVDQDK YPHMLSVRNC FIRGSVVRYV QLPKDGVDVD LLHDAARREA RGG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.