Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr3P22490_001 | cytosol, cytosol, nucleus, nucleus |
| GSMUA_Achr5P26110_001 | cytosol, cytosol, nucleus, nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG30280 | Sorghum | cytosol | 57.89 | 94.62 |
| AT1G03330.1 | Thale cress | cytosol | 55.26 | 90.32 |
| Bra030529.1-P | Field mustard | cytosol | 55.26 | 90.32 |
| PGSC0003DMT400009801 | Potato | cytosol | 55.26 | 90.32 |
| Solyc09g072970.2.1 | Tomato | cytosol | 55.26 | 90.32 |
| PGSC0003DMT400051614 | Potato | cytosol | 49.34 | 89.29 |
| Solyc06g084350.2.1 | Tomato | cytosol | 54.61 | 89.25 |
| VIT_07s0104g00560.t01 | Wine grape | cytosol | 55.26 | 86.6 |
| KRG95475 | Soybean | nucleus | 52.63 | 86.02 |
| KRH67157 | Soybean | cytosol | 52.63 | 86.02 |
| GSMUA_Achr8P06050_001 | Banana | extracellular | 59.21 | 85.71 |
| CDX89900 | Canola | endoplasmic reticulum, extracellular | 55.92 | 80.19 |
| Zm00001d024593_P001 | Maize | cytosol | 37.5 | 71.25 |
| CDX86679 | Canola | cytosol | 56.58 | 69.35 |
| CDY15459 | Canola | cytosol | 57.24 | 67.44 |
| Zm00001d024591_P001 | Maize | cytosol, mitochondrion, nucleus | 28.29 | 30.5 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P14210_001 | EnsemblPlants:GSMUA_Achr11T14210_001 | EnsemblPlantsGene:GSMUA_Achr11G14210_001 | Gene3D:2.30.30.100 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0030529 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | InterPro:U6_snRNA_Lsm2 | PANTHER:PTHR13829 | PFAM:PF01423 |
| SMART:SM00651 | SUPFAM:SSF50182 | UniParc:UPI00029562D4 | UniProt:M0RS51 | MapMan:16.4.3.2 | : |
Description
U6 snRNA-associated Sm-like protein LSm2 [Source:GMGC_GENE;Acc:GSMUA_Achr11G14210_001]
Coordinates
chr11:+:15248784..15252727
Molecular Weight (calculated)
17553.1 Da
IEP (calculated)
7.671
GRAVY (calculated)
-0.279
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSDSDWVIS NSHETPVTRN WVDPIRQDAN PALFHLCDLN LPFFPSTSRH RALNPLVAKM LFFSYFKELV GKEVTVELKN DLAIRGILHS VDQYLNIKLE
101: NIRVVDQDKY PHMLSVRNCF IRGSVVRYVQ LPPDGVDIDI LHDATRREAR GP
101: NIRVVDQDKY PHMLSVRNCF IRGSVVRYVQ LPPDGVDIDI LHDATRREAR GP
1: MLFFSYFKDL VGQEVTVELK NDLAIRGTLH SVDQYLNIKL ENTRVVDQDK YPHMLSVRNC FIRGSVVRYV QLPKDGVDVD LLHDAARREA RGG
Arabidopsis Description
LSM2Sm-like protein LSM2 [Source:UniProtKB/TrEMBL;Acc:A0A178W785]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.