Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| EES03941 | cytosol, cytosol, nucleus, nucleus |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G03330.1 | EES03941 | AT1G21190.1 | 23221597 |
| AT1G03330.1 | EES03941 | AT1G21190.1 | 23221597 |
| AT1G03330.1 | EES03941 | AT1G76860.1 | 23221597 |
| AT1G03330.1 | EES03941 | AT1G76860.1 | 23221597 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G03330.1 | Thale cress | cytosol | 92.47 | 92.47 |
| PGSC0003DMT400009801 | Potato | cytosol | 91.4 | 91.4 |
| Solyc09g072970.2.1 | Tomato | cytosol | 91.4 | 91.4 |
| Bra030529.1-P | Field mustard | cytosol | 90.32 | 90.32 |
| Solyc06g084350.2.1 | Tomato | cytosol | 90.32 | 90.32 |
| PGSC0003DMT400051614 | Potato | cytosol | 79.57 | 88.1 |
| VIT_07s0104g00560.t01 | Wine grape | cytosol | 91.4 | 87.63 |
| KRG95475 | Soybean | nucleus | 87.1 | 87.1 |
| KRH67157 | Soybean | cytosol | 87.1 | 87.1 |
| GSMUA_Achr8P06050_001 | Banana | extracellular | 95.7 | 84.76 |
| CDX89900 | Canola | endoplasmic reticulum, extracellular | 91.4 | 80.19 |
| CDX86679 | Canola | cytosol | 90.32 | 67.74 |
| CDY15459 | Canola | cytosol | 90.32 | 65.12 |
| GSMUA_Achr11P... | Banana | cytosol | 94.62 | 57.89 |
| Zm00001d024591_P001 | Maize | cytosol, mitochondrion, nucleus | 46.24 | 30.5 |
Protein Annotations
| MapMan:16.4.3.2 | Gene3D:2.30.30.100 | UniProt:A0A194YPX4 | GO:GO:0000398 | GO:GO:0000932 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005681 | GO:GO:0005688 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 |
| GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | GO:GO:0030529 |
| GO:GO:0046540 | ProteinID:KXG30279.1 | EnsemblPlants:KXG30280 | ProteinID:KXG30280 | ProteinID:KXG30280.1 | InterPro:LSM_dom_euk/arc |
| InterPro:LSM_dom_sf | ProteinID:OQU85008.1 | PFAM:PF01423 | PIRSF:PIRSF016394 | PANTHER:PTHR13829 | SMART:SM00651 |
| EnsemblPlantsGene:SORBI_3004G156400 | SUPFAM:SSF50182 | InterPro:U6_snRNA_Lsm2 | UniParc:UPI00016EEE7B | : | : |
Description
hypothetical protein
Coordinates
chr4:+:49473405..49486094
Molecular Weight (calculated)
10756.0 Da
IEP (calculated)
7.606
GRAVY (calculated)
-0.219
Length
93 amino acids
Sequence
(BLAST)
(BLAST)
1: MLFFSYFKEL VGKEVTVELK NDLAIRGTLH SVDQYLNIKL ENTRVVDQDK YPHMLSVRNC FIRGSVVRYV MLPQDGVDID ILHDATRREA RGG
1: MLFFSYFKDL VGQEVTVELK NDLAIRGTLH SVDQYLNIKL ENTRVVDQDK YPHMLSVRNC FIRGSVVRYV QLPKDGVDVD LLHDAARREA RGG
Arabidopsis Description
LSM2Sm-like protein LSM2 [Source:UniProtKB/TrEMBL;Acc:A0A178W785]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.