Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- cytosol 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030529.1-P | Field mustard | cytosol | 75.0 | 100.0 |
| AT1G03330.1 | Thale cress | cytosol | 72.58 | 96.77 |
| PGSC0003DMT400009801 | Potato | cytosol | 68.55 | 91.4 |
| Solyc09g072970.2.1 | Tomato | cytosol | 68.55 | 91.4 |
| KXG30280 | Sorghum | cytosol | 67.74 | 90.32 |
| Solyc06g084350.2.1 | Tomato | cytosol | 67.74 | 90.32 |
| VIT_07s0104g00560.t01 | Wine grape | cytosol | 68.55 | 87.63 |
| KRG95475 | Soybean | nucleus | 65.32 | 87.1 |
| KRH67157 | Soybean | cytosol | 65.32 | 87.1 |
| PGSC0003DMT400051614 | Potato | cytosol | 58.87 | 86.9 |
| CDX89900 | Canola | endoplasmic reticulum, extracellular | 72.58 | 84.91 |
| GSMUA_Achr8P06050_001 | Banana | extracellular | 67.74 | 80.0 |
| CDY15459 | Canola | cytosol | 80.65 | 77.52 |
| Zm00001d024593_P001 | Maize | cytosol | 44.35 | 68.75 |
| GSMUA_Achr11P... | Banana | cytosol | 69.35 | 56.58 |
| Zm00001d024591_P001 | Maize | cytosol, mitochondrion, nucleus | 32.26 | 28.37 |
Protein Annotations
| EnsemblPlants:CDX86679 | EnsemblPlantsGene:GSBRNA2T00145360001 | Gene3D:2.30.30.100 | GO:A0A078DE80 | GO:GO:0006139 | GO:GO:0006397 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | InterPro:U6_snRNA_Lsm2 |
| PANTHER:PTHR13829 | PFAM:PF01423 | PIRSF:PIRSF016394 | ProteinID:CDX86679 | ProteinID:CDX86679.1 | SMART:SM00651 |
| SUPFAM:SSF50182 | UniParc:UPI0004EE6A7E | MapMan:16.4.3.2 | : | : | : |
Description
BnaC08g00240D
Coordinates
chrLK031846:+:1637596..1638903
Molecular Weight (calculated)
14320.2 Da
IEP (calculated)
8.454
GRAVY (calculated)
-0.255
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVTKAHYLS ALHFTFSLLY YEQRKQSAEK QMLFFSYFKD LVGQEVTVEL KNDLAIRGTL HSVDQYLNIK LENTRVVDQD KFPHMLSVRN CFIRGSVVRY
101: VQLPPDGVDV DLLHDAARRE ARGA
101: VQLPPDGVDV DLLHDAARRE ARGA
1: MLFFSYFKDL VGQEVTVELK NDLAIRGTLH SVDQYLNIKL ENTRVVDQDK YPHMLSVRNC FIRGSVVRYV QLPKDGVDVD LLHDAARREA RGG
Arabidopsis Description
LSM2Sm-like protein LSM2 [Source:UniProtKB/TrEMBL;Acc:A0A178W785]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.