Factsheet for GSMUA_Achr8P06050_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
nucleus 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P22490_001	cytosol, cytosol, nucleus, nucleus
GSMUA_Achr5P26110_001	cytosol, cytosol, nucleus, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03330.1	GSMUA_Achr3P22490_001	AT1G21190.1	23221597
AT1G03330.1	GSMUA_Achr5P26110_001	AT1G21190.1	23221597
AT1G03330.1	GSMUA_Achr3P22490_001	AT1G21190.1	23221597
AT1G03330.1	GSMUA_Achr5P26110_001	AT1G21190.1	23221597
AT1G03330.1	GSMUA_Achr3P22490_001	AT1G76860.1	23221597
AT1G03330.1	GSMUA_Achr5P26110_001	AT1G76860.1	23221597
AT1G03330.1	GSMUA_Achr3P22490_001	AT1G76860.1	23221597
AT1G03330.1	GSMUA_Achr5P26110_001	AT1G76860.1	23221597

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG30280	Sorghum	cytosol	84.76	95.7
AT1G03330.1	Thale cress	cytosol	80.95	91.4
PGSC0003DMT400009801	Potato	cytosol	80.95	91.4
Solyc09g072970.2.1	Tomato	cytosol	80.95	91.4
VIT_07s0104g00560.t01	Wine grape	cytosol	83.81	90.72
Bra030529.1-P	Field mustard	cytosol	80.0	90.32
Solyc06g084350.2.1	Tomato	cytosol	80.0	90.32
PGSC0003DMT400051614	Potato	cytosol	71.43	89.29
KRG95475	Soybean	nucleus	77.14	87.1
KRH67157	Soybean	cytosol	77.14	87.1
CDX89900	Canola	endoplasmic reticulum, extracellular	81.9	81.13
Zm00001d024593_P001	Maize	cytosol	54.29	71.25
CDX86679	Canola	cytosol	80.0	67.74
CDY15459	Canola	cytosol	80.0	65.12
GSMUA_Achr11P...	Banana	cytosol	85.71	59.21
Zm00001d024591_P001	Maize	cytosol, mitochondrion, nucleus	40.0	29.79

Protein Annotations

MapMan:16.4.3.2	Gene3D:2.30.30.100	GO:GO:0000398	GO:GO:0000932	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005681	GO:GO:0005688	GO:GO:0005737	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150
GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	GO:GO:0030529	GO:GO:0046540	EnsemblPlantsGene:GSMUA_Achr8G06050_001
EnsemblPlants:GSMUA_Achr8P06050_001	EnsemblPlants:GSMUA_Achr8T06050_001	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	UniProt:M0TN08	PFAM:PF01423
PIRSF:PIRSF016394	PANTHER:PTHR13829	SMART:SM00651	SUPFAM:SSF50182	InterPro:U6_snRNA_Lsm2	UniParc:UPI000294A406
SEG:seg	:	:	:	:	:

Description

U6 snRNA-associated Sm-like protein LSm2 [Source:GMGC_GENE;Acc:GSMUA_Achr8G06050_001]

Coordinates

chr8:+:3935209..3939846

Molecular Weight (calculated)

12052.6 Da

IEP (calculated)

6.955

GRAVY (calculated)

-0.131

Length

105 amino acids

Sequence
(BLAST)

001: MSTHLDLLSP LLQLFFSYFK ELVGKEVTVE LKNDLAIRGT LHSVDQYLNI KLENIRVVDQ DKYPHMLSVR NCFIRGSVVR YVQLPPDGVD IDILHDATRR
101: EARGG

Best Arabidopsis Sequence Match ( AT1G03330.1 )
(BLAST)

1: MLFFSYFKDL VGQEVTVELK NDLAIRGTLH SVDQYLNIKL ENTRVVDQDK YPHMLSVRNC FIRGSVVRYV QLPKDGVDVD LLHDAARREA RGG

Arabidopsis Description

LSM2Sm-like protein LSM2 [Source:UniProtKB/TrEMBL;Acc:A0A178W785]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.