Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- extracellular 2
- nucleus 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g068080.2.1 | Tomato | cytosol | 89.12 | 89.12 |
| PGSC0003DMT400073364 | Potato | cytosol | 89.12 | 89.12 |
| KRH44443 | Soybean | cytosol | 89.12 | 89.12 |
| Solyc03g116600.2.1 | Tomato | cytosol | 87.76 | 87.76 |
| PGSC0003DMT400001702 | Potato | cytosol | 87.76 | 87.76 |
| GSMUA_Achr4P05640_001 | Banana | cytosol | 85.71 | 85.71 |
| GSMUA_Achr8P14590_001 | Banana | cytosol | 85.71 | 85.71 |
| AT1G15370.1 | Thale cress | extracellular | 84.35 | 84.35 |
| Bra026139.1-P | Field mustard | extracellular | 83.67 | 83.67 |
| Bra026769.1-P | Field mustard | extracellular | 83.67 | 83.67 |
| CDY36552 | Canola | extracellular | 83.67 | 83.67 |
| CDY55980 | Canola | extracellular | 83.67 | 83.67 |
| CDY71251 | Canola | extracellular | 83.67 | 83.67 |
| Zm00001d034893_P001 | Maize | mitochondrion | 81.63 | 81.63 |
| KRH09738 | Soybean | cytosol | 80.95 | 80.95 |
| EER90485 | Sorghum | cytosol | 80.95 | 80.95 |
| KRH47463 | Soybean | extracellular | 81.63 | 80.54 |
| TraesCS5B01G559500.1 | Wheat | cytosol | 80.27 | 80.27 |
| TraesCS4A01G319600.1 | Wheat | cytosol | 79.59 | 79.59 |
| TraesCS5D01G565700.1 | Wheat | cytosol | 79.59 | 79.59 |
| CDY39638 | Canola | cytosol | 83.67 | 75.0 |
| HORVU6Hr1G069160.1 | Barley | extracellular | 40.14 | 67.82 |
| HORVU7Hr1G058240.1 | Barley | cytosol | 34.01 | 66.67 |
| HORVU3Hr1G098440.1 | Barley | cytosol | 34.01 | 66.67 |
| HORVU2Hr1G112780.2 | Barley | extracellular | 39.46 | 66.67 |
| HORVU3Hr1G030140.1 | Barley | extracellular | 38.1 | 64.37 |
| HORVU7Hr1G068500.1 | Barley | cytosol | 32.65 | 64.0 |
| HORVU3Hr1G032710.2 | Barley | extracellular | 40.82 | 61.22 |
Protein Annotations
| EntrezGene:100245686 | wikigene:100245686 | MapMan:22.1.4.3 | Gene3D:3.30.450.60 | InterPro:AP_mu_sigma_su | ProteinID:CBI36312 |
| ProteinID:CBI36312.3 | UniProt:D7U116 | EMBL:FN596494 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016192 | EntrezGene:LOC100245686 | wikigene:LOC100245686 | InterPro:Longin-like_dom_sf |
| PFAM:PF01217 | PANTHER:PTHR11043 | PANTHER:PTHR11043:SF1 | SUPFAM:SSF64356 | TIGR:TC53120 | TIGR:TC54849 |
| UniParc:UPI00015CD0E5 | ArrayExpress:VIT_09s0002g06730 | EnsemblPlantsGene:VIT_09s0002g06730 | EnsemblPlants:VIT_09s0002g06730.t01 | unigene:Vvi.2342 | RefSeq:XP_002268544 |
| RefSeq:XP_002268544.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr9:-:6633791..6644039
Molecular Weight (calculated)
16660.5 Da
IEP (calculated)
5.820
GRAVY (calculated)
0.142
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLAVLFANS EGNILVERFS GVPAEERLHW RSFLVKLGAD NLKGVKNEEL LVACHKSVYI VYTVLGDVSI YVVGKDEYDE LALAEVIFVI ISSVKDVCGK
101: PPTERLFLDK YGKICLCLDE IVWKGMLENA DKDRIRRLTR LKPPTEF
101: PPTERLFLDK YGKICLCLDE IVWKGMLENA DKDRIRRLTR LKPPTEF
001: MILAVLFANS VGNVLIERFN GVPAEERLHW RSFLVKLGAD NLKGVKNEEL LVACHKSVYI VYTMLGDVSI FLVGKDEYDE LALAETIYII TAAVKDVCGK
101: PPTERVFLDK YGRICLCLDE IVWNGLLENT DKDRIKRLIR LKPPSEV
101: PPTERVFLDK YGRICLCLDE IVWNGLLENT DKDRIKRLIR LKPPSEV
Arabidopsis Description
F9L1.32 protein [Source:UniProtKB/TrEMBL;Acc:Q9XI32]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.