Factsheet for VIT_08s0056g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0125g00350.t01
VIT_00s0783g00010.t01
VIT_00s0961g00020.t01
VIT_09s0002g06730.t01
VIT_11s0016g00830.t01
VIT_11s0052g00920.t01
VIT_14s0171g00280.t01
VIT_17s0053g00580.t01
VIT_18s0122g01080.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24710.1	VIT_00s0125g00350.t01	AT1G04810.1	24529374
AT5G24710.1	VIT_09s0002g06730.t01	AT1G15370.1	24529374
AT5G24710.1	VIT_18s0122g01080.t01	AT1G20760.1	24529374
AT5G24710.1	VIT_11s0016g00830.t01	AT2G05830.1	24529374
AT5G24710.1	VIT_17s0053g00580.t01	AT2G05830.1	24529374
AT5G24710.1	VIT_14s0171g00280.t01	AT3G01780.1	24529374
AT5G24710.1	VIT_00s0783g00010.t01	AT3G50590.1	24529374
AT5G24710.1	VIT_00s0961g00020.t01	AT3G50590.1	24529374
AT5G24710.1	VIT_11s0052g00920.t01	AT5G57460.1	24529374

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96637	Soybean	endoplasmic reticulum	53.23	85.93
KRG89827	Soybean	cytosol	15.35	81.4
KRG99486	Soybean	endoplasmic reticulum	13.71	80.39
CDY19826	Canola	mitochondrion	53.51	78.77
HORVU1Hr1G042290.1	Barley	mitochondrion	3.34	78.21
KRH68370	Soybean	endoplasmic reticulum	57.79	77.96
VIT_05s0094g01650.t01	Wine grape	cytosol	3.02	76.39
AT5G24710.1	Thale cress	mitochondrion	56.63	75.02
CDX87116	Canola	mitochondrion	54.99	72.95
PGSC0003DMT400046936	Potato	mitochondrion	56.36	72.86
Solyc01g102510.2.1	Tomato	nucleus	56.36	71.69

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:2.130.10.10	MapMan:22.1.4.4	EMBL:AM458757	ProteinID:CAN63464
ProteinID:CAN63464.1	ProteinID:CCB55926	ProteinID:CCB55926.1	ncoils:Coil	UniProt:F6HMQ1	EMBL:FN595995
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0006139	GO:GO:0006259	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0015074
GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF07727	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
InterPro:RVT_2	SMART:SM00320	SUPFAM:SSF50978	SUPFAM:SSF56672	TIGR:TC52339	UniParc:UPI000210A740
ArrayExpress:VIT_08s0056g00040	EnsemblPlantsGene:VIT_08s0056g00040	EnsemblPlants:VIT_08s0056g00040.t01	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:+:46698..104830

Molecular Weight (calculated)

198331.0 Da

IEP (calculated)

7.859

GRAVY (calculated)

-0.108

Length

1824 amino acids

Sequence
(BLAST)

0001: MASWEVNQNS FCHGNLTKKE MLRLRTFRPT NDKIVKIQLH PTHPWLVTAD ASDHVSVWNW EHRQVIYELK AGGIDERRLV GAKLEKLAEG ESEPKGKPTE
0101: AMRGGSVKQV DFYDDDVRFW QLWRNRSAAA EAPSAVNHVT SAFSSPAPST KGRHFLVICC ENKAIFLDLV TMRGRDVPKQ ELDNKSLLCM EFLSRSAGGD
0201: APLVAFGGSD GVIRVLSMIT WKLVRRYTGG HKGSISCLMT FMASSGEALL ISGASDGLLI LWSADHGQDS RELVPKLSLK AHDGGVVAVE LSRVIGGAPQ
0301: LITIGADKTL AIWDTISFKE LRRIKPVPKL ACHSVASWCH PRAPNLDILT CVKDSHIWAI EHPTYSALTR PLCELSSLVP PQVLAPNKKL RVYCMVAHPL
0401: QPHLVATGTN IGVIVSEFDA RSLPAVAALP TPVGSREHSA VYVVERELKL LNFQLSSTAN PSLGSNGSLS ETGRFRGDSL EPLHVKQIKK HISTPVPHDS
0501: YSVLSISSSG KYLAIVWPDI PYFSIYKVSD WSIVDSGSAR LLAWDTCRDR FALLESSLPP RIPIIPKGGS RKAKEAAAAA AQAAAAAASA ASTATVQLRI
0601: LLDDGTSNVY MRSIGGRSDP VIGLHGGALL GVAYRTSRRI SPVAATAIST IQSMPLSGFG SSGLSSFTTL DDGFSSHKSP TEAAPQNFQL YSWETFEPVG
0701: GLLPQPEWTA WDQTVEYCAF GYQQYIVISS LRPQYRYLGD VAIPYATGAV WHRRQLFVAT PTTIETGVRG RRLIPHFLLF PDQPLYFLPP RVFGCTCFVH
0801: ILTPGQDKLS AKAMKCLFLG YSRLQKGYRC YSLETHRYFI SADVTFFEDS PFFSTTSESL PVSEVLPFPI VSPSDVVPPR PLQVYHRLPH VAAPLPFAEA
0901: PADSLPIPSA SPAPALPSPD DLPITIRKGT RSTRNPHPIY NFLSYHRLSS PYSAFVSTIS SVSLPKSTHE VLSHPSWRQA MVDEMAALHS NGTWDLVVLP
1001: SGKSAVGCRW VYAVKVGPDG QVGRLKARLV AKGYIQVYGS DYGDTFSPVA KIASVRLLLS MAAMCSWPLY QLDIKNVFLH GDLAEEVYME QPPGFVAQGE
1101: SGSDQDGIQK LKQHLFTHFQ TKDLGKLKYF LGIEIAQSSS GVVLSQRKYA LDILEEIGML DCKPINTPID PNVKLVPGQG EPLGDPRRYR WLVGKLNYLT
1201: ITRPDISFPV SVVSQFLQSP CDSHWDVVIR ILRYIKSTPG QGVLYENRGH TQVVGYTDAD WAGSPADRRS TSGCVFVDAG VAPIDIETRK MKEEMKSKEA
1301: RARAVAEHGE LALITVDGPQ TVANERIALR PPMLQVVRLA SFQHPPSVPP FLTLPKQSKV DGDDSVLQKE MEERKTNEIA VGGGGVSVAV TRFPTEQRRP
1401: VGPLVVVGVR DGVLWLIDRY MCAHALSLSH PGIRCRCLAA YGDAVSAVKW ASRLAREHHD DLAQFMLGMG YATEALHLPG ISKRLEFDLA MQSNDLKRAL
1501: QCLLTMSNSR DIGQENTGLS LNDILSLTTK KENILDAVQG IVKFAKEFLD LIDAADATAQ ADIAREALKR LAAAGSMKGA LQGHELRGLA LRLANHGELT
1601: QLSGLVNNLI SVGLGREAAF AAAVLGDNAL MEKAWQDTGM LAEAVLHAHA HGRPTLKNLV QAWNKMLQKE IEHTPSTKTD AAAAFLASLE EPKLTSLAEA
1701: GKKPPIEILP PGMLSLSAPI SVQKKPVPAI QGSQQQPGKP LLLEAPPTTT SVSAPTPSES SEATAEDNNP SSSVTDPGPD PVALAPTVPA STSGPVLPED
1801: APKEPDIQEM SVPATTLPMT DPLA

Best Arabidopsis Sequence Match ( AT5G24710.1 )
(BLAST)

0001: MLRARAFRQT NGKIVKIQVH PTHPWLVTAD DSDHVSVWNW EHRQVIYELK AGGVDERRLV GAKLEKLAEG ESDYKAKPTE AIRGGSVKQV KFYDDDVRYW
0101: QLWRNRSAAA ESPSAVNHLT SAFTSPAPST KGRHFLVICC ENKAIFLDLV TMRGRDVPKQ ELDNKSLLCM EFLSRSSGGD GPLVAFGSTD GVIRVLSMIT
0201: WKLARRYTGG HKGSIYCLMN FMASSGEALL VSGGSDGLLV LWSADHGADS RELVPKLSLK AHDGGVVAVE LSRVSGSAPQ LITIGADKTL AIWDTMTFKE
0301: LRRIKPVPKL ACHSVASWCH PRAPNLDILT CVKDSHIWSI EHPTYSALTR PLCELSSLVP PQVLATHRKL RVYCMVAHPL QPHLVATGTN VGIIVSEFDP
0401: RAIPSAAPLP ALPGSRENSA IYILGRELKL LNFQLSNTAN PSLGNNSALS ESGLSKGDPG EQLTVKQTKK QIVAPVPHDS YSVLSVSSSG KYVAVVWPDI
0501: LYFSIYKVSD WSIVDSGSAR LLAWDTCRDR FAILESVLPH RMPIIPKGGS SRKAKEAAAA AAQAAAAASA ASSASVQVRI LLDDGTSNIL MRSVGGRSEP
0601: VIGLHGGALL GIGYRTSRRI SPVAATAIST IQSMPLSGFG NSNVSSFSSY DDGFSSQKSA ESAPLNYQLY SWENFEPVGG MLPQPEWTAW DQTVEYCAFA
0701: YQQYMVISSL RPQYRYLGDV AIAHATGAVW HRRQLFVATP TTIECVFVDA GVSEIDIETR KMKEEMKLKE AQARAVAEHG ELALITVEGS QAAKQERISL
0801: RPPMLQVVRL ASFQNAPSVP PFLSLPRQSR GDSDDIMDER RVNEVAVGGG GVSVAVTRFP VEQKRPVGPL VVAGVRDGVL WLIDRYMCAH AISLNHPGIR
0901: CRCLAAYGDA VSAVKWASRL GREHHDDLAQ FMLGMGYATE ALHLPGISKR LEFDLAMQSN DLKRALHCLL TMSNSKDIGQ DGVGLDLSDI LSLTATKKED
1001: VVEAVEGIVK FAKEFLDLID AADATGHADI AREALKRLAT AGSVKGALQG HELRGLSLRL ANHGELTRLS GLVNNLISIG LGRESAFSAA VLGDNALMEK
1101: AWQDTGMLAE AVLHAHAHGR PTLKNLVQAW NKTLQKEVEK APSSKTDAAS AFLASLEDPK LTSLSDASRK PPIEILPPGM SSIFASITAP KKPLLTQKTA
1201: QPEVAKPLAL EEPTKPLAIE APPSSEAPQT ESAPETAAAA ESPAPETAAV AESPAPGTAA VAEAPASETA AAPVDGPVTE TVSEPPPVEK EETSLEEKSD
1301: PSSTPNTETA TSTENTSQTT TTPESVTTAP PEPITTAPPE TVTTTAVKPT ENAATERRVT NYPPIRSQPI DFDFLNG

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KIH8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.