Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 6
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G24710.1 | PGSC0003DMT400040763 | AT1G04810.1 | 24529374 |
| AT5G24710.1 | PGSC0003DMT400076219 | AT1G04810.1 | 24529374 |
| AT5G24710.1 | PGSC0003DMT400001702 | AT1G15370.1 | 24529374 |
| AT5G24710.1 | PGSC0003DMT400073364 | AT1G15370.1 | 24529374 |
| AT5G24710.1 | PGSC0003DMT400025666 | AT1G20760.1 | 24529374 |
| AT5G24710.1 | PGSC0003DMT400064893 | AT2G05830.1 | 24529374 |
| AT5G24710.1 | PGSC0003DMT400029685 | AT5G57460.1 | 24529374 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g102510.2.1 | Tomato | nucleus | 95.32 | 93.79 |
| KRG96637 | Soybean | endoplasmic reticulum | 64.78 | 80.89 |
| KRG99486 | Soybean | endoplasmic reticulum | 16.94 | 76.85 |
| KRG89827 | Soybean | cytosol | 18.71 | 76.74 |
| CDY19826 | Canola | mitochondrion | 66.76 | 76.03 |
| GSMUA_Achr1P28020_001 | Banana | mitochondrion | 66.76 | 75.24 |
| KRH68370 | Soybean | endoplasmic reticulum | 70.59 | 73.67 |
| GSMUA_Achr6P21400_001 | Banana | mitochondrion | 68.89 | 73.53 |
| AT5G24710.1 | Thale cress | mitochondrion | 70.3 | 72.04 |
| TraesCS3B01G263200.1 | Wheat | golgi, unclear | 68.25 | 70.81 |
| TraesCS3A01G236500.2 | Wheat | mitochondrion | 68.04 | 70.8 |
| CDX87116 | Canola | mitochondrion | 68.82 | 70.62 |
| Os01t0653800-02 | Rice | plasma membrane | 68.82 | 70.52 |
| HORVU1Hr1G042290.1 | Barley | mitochondrion | 3.9 | 70.51 |
| KXG33009 | Sorghum | mitochondrion | 68.53 | 70.07 |
| TraesCS3D01G237000.1 | Wheat | mitochondrion | 68.18 | 68.96 |
| Zm00001d044026_P011 | Maize | mitochondrion | 68.25 | 66.19 |
| Zm00001d011483_P004 | Maize | mitochondrion | 67.68 | 63.71 |
| VIT_08s0056g00040.t01 | Wine grape | cytosol | 72.86 | 56.36 |
| Os05t0297001-01 | Rice | extracellular | 2.55 | 51.43 |
| Bra028077.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, plastid | 5.53 | 45.61 |
| Os01t0653350-00 | Rice | mitochondrion | 4.82 | 29.69 |
Protein Annotations
| EntrezGene:102597779 | Gene3D:2.130.10.10 | MapMan:22.1.4.4 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:M1BJW0 | EnsemblPlantsGene:PGSC0003DMG400018227 |
| PGSC:PGSC0003DMG400018227 | EnsemblPlants:PGSC0003DMT400046936 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR45521 |
| SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI000296B9A4 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | RefSeq:XP_006358495.1 | SEG:seg | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400018227]
Coordinates
chr1:-:79217831..79231862
Molecular Weight (calculated)
149946.0 Da
IEP (calculated)
7.256
GRAVY (calculated)
-0.100
Length
1411 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLRLRAFRPT NDKIVKIQMH PTHPWLVTAD ASDHVSVWNW EHRQIIYELK PGGVDERRLV GAKLEKLAEG ESEPRGKPTE AIRGGSVKQV SFYDDDVRFW
0101: QLWRNQSAAA ESPAAAGHVT STFTSPAAST KGRHFLVICC ENKAIFLDLV TMRGRDVPKQ ELDNRSLLCM VFLSKTTAVD GPLVAFGGSD GVIRVLSMIT
0201: WKLARRYTGG HKGAISCLMN FMAASGESLL VSGGSDGLLV LWSADNALDS RELVPKLSLK AHDGGVIAVE LSRVIGNAPQ LITIGADKTL AIWDTVSFKE
0301: LRRIKPVPKL ACHSVASWCH PRAPNLDILT CVKDSHIWAV EHPTYSALTR PLCELSALVP PQLLVSHKKL KVYSMVAHPL QPHLVATGTN IGIILCEFDQ
0401: KSLPPVAVLP TPTESREHTA VYVVERELKL LQFQLSNTTA PALGSNGSLS DTGRFRGEIP EQLHVKQTKK HITTPAPHDS YSVLSVSSSG KYLAIVWPDI
0501: PYFSIYKVSD WSIVDSGSAR LLAWDTCRDR FALLESALPP RIPIIPKGSS RKAKEAAAAA AQAAAAAASA ASSATVQVRI LLDDGTSNVL MKSVGSRSEP
0601: VIGLHGGALL GVAYRTSRRV SAAAATAIST IQSMPLSGYG GSSVSSFSTM EDGSQKSAAE AAPQNFQLYS WETFQPVGGL LPQPDWTAWD QTVEYCAFGY
0701: PQHIVICSLR PQFRYLGDVA IPFATGAVWQ RRQLFVATPT TVECVFVDAG VAPIDIETKR RKEEMKLKEA QSRGIAEHGE LALITVDNQQ SNPQERIALR
0801: PPMLQVVRLA SFQHAPSIPP FLSLPRQSKV DGDASSVLKE MEARKANEVA VGGGGVAVAV TRFPAEQTRP VGPLVIVGVR DGVLWLIDRY MCAHAISLSH
0901: PGIRCRCLAA YGDAVSAVKW ASRLGREHHD DLAQFMLGMG YATEALHLPG ISKRLEFDLA LQSNDLKRAL QCLLTMSNSR DIGQETVGLD LNDLMNMTKK
1001: KENVVEAVQG VVKFAKEFME LIDAADATAQ ADIAREALKR LAAAGSIKGA LRGQELRGVA LRLANHGELT RLSNLVNNLI SVGAGREAAF AAALLGDNVL
1101: MEKAWQETGM LAEAVLHAHA HGRPSMRTLV QSWNKMLQKE MEHTPSMKTD AAAAFLASLE GPKLTSLADA AKKPPIEILP PGMASLYGPN PGQAKPLLGK
1201: PGLPQPGKPL LLEGSKTTAP MASVPAGSNT SATSESGVPP KSENGASTTP ESGNPPASDS GAAPASDSGA APAADSGAAP ASDSGAAPAS ETGAAPTTET
1301: GAAPPATETG ATPPAIESGA TPTTETGATP AESSTTQTSN LDSSVAADAI MPATPALNES DYLALIPSTS APVEPTTIGA IVPSTSATGP PPATDNKKPS
1401: VPDERLMIDF S
0101: QLWRNQSAAA ESPAAAGHVT STFTSPAAST KGRHFLVICC ENKAIFLDLV TMRGRDVPKQ ELDNRSLLCM VFLSKTTAVD GPLVAFGGSD GVIRVLSMIT
0201: WKLARRYTGG HKGAISCLMN FMAASGESLL VSGGSDGLLV LWSADNALDS RELVPKLSLK AHDGGVIAVE LSRVIGNAPQ LITIGADKTL AIWDTVSFKE
0301: LRRIKPVPKL ACHSVASWCH PRAPNLDILT CVKDSHIWAV EHPTYSALTR PLCELSALVP PQLLVSHKKL KVYSMVAHPL QPHLVATGTN IGIILCEFDQ
0401: KSLPPVAVLP TPTESREHTA VYVVERELKL LQFQLSNTTA PALGSNGSLS DTGRFRGEIP EQLHVKQTKK HITTPAPHDS YSVLSVSSSG KYLAIVWPDI
0501: PYFSIYKVSD WSIVDSGSAR LLAWDTCRDR FALLESALPP RIPIIPKGSS RKAKEAAAAA AQAAAAAASA ASSATVQVRI LLDDGTSNVL MKSVGSRSEP
0601: VIGLHGGALL GVAYRTSRRV SAAAATAIST IQSMPLSGYG GSSVSSFSTM EDGSQKSAAE AAPQNFQLYS WETFQPVGGL LPQPDWTAWD QTVEYCAFGY
0701: PQHIVICSLR PQFRYLGDVA IPFATGAVWQ RRQLFVATPT TVECVFVDAG VAPIDIETKR RKEEMKLKEA QSRGIAEHGE LALITVDNQQ SNPQERIALR
0801: PPMLQVVRLA SFQHAPSIPP FLSLPRQSKV DGDASSVLKE MEARKANEVA VGGGGVAVAV TRFPAEQTRP VGPLVIVGVR DGVLWLIDRY MCAHAISLSH
0901: PGIRCRCLAA YGDAVSAVKW ASRLGREHHD DLAQFMLGMG YATEALHLPG ISKRLEFDLA LQSNDLKRAL QCLLTMSNSR DIGQETVGLD LNDLMNMTKK
1001: KENVVEAVQG VVKFAKEFME LIDAADATAQ ADIAREALKR LAAAGSIKGA LRGQELRGVA LRLANHGELT RLSNLVNNLI SVGAGREAAF AAALLGDNVL
1101: MEKAWQETGM LAEAVLHAHA HGRPSMRTLV QSWNKMLQKE MEHTPSMKTD AAAAFLASLE GPKLTSLADA AKKPPIEILP PGMASLYGPN PGQAKPLLGK
1201: PGLPQPGKPL LLEGSKTTAP MASVPAGSNT SATSESGVPP KSENGASTTP ESGNPPASDS GAAPASDSGA APAADSGAAP ASDSGAAPAS ETGAAPTTET
1301: GAAPPATETG ATPPAIESGA TPTTETGATP AESSTTQTSN LDSSVAADAI MPATPALNES DYLALIPSTS APVEPTTIGA IVPSTSATGP PPATDNKKPS
1401: VPDERLMIDF S
0001: MLRARAFRQT NGKIVKIQVH PTHPWLVTAD DSDHVSVWNW EHRQVIYELK AGGVDERRLV GAKLEKLAEG ESDYKAKPTE AIRGGSVKQV KFYDDDVRYW
0101: QLWRNRSAAA ESPSAVNHLT SAFTSPAPST KGRHFLVICC ENKAIFLDLV TMRGRDVPKQ ELDNKSLLCM EFLSRSSGGD GPLVAFGSTD GVIRVLSMIT
0201: WKLARRYTGG HKGSIYCLMN FMASSGEALL VSGGSDGLLV LWSADHGADS RELVPKLSLK AHDGGVVAVE LSRVSGSAPQ LITIGADKTL AIWDTMTFKE
0301: LRRIKPVPKL ACHSVASWCH PRAPNLDILT CVKDSHIWSI EHPTYSALTR PLCELSSLVP PQVLATHRKL RVYCMVAHPL QPHLVATGTN VGIIVSEFDP
0401: RAIPSAAPLP ALPGSRENSA IYILGRELKL LNFQLSNTAN PSLGNNSALS ESGLSKGDPG EQLTVKQTKK QIVAPVPHDS YSVLSVSSSG KYVAVVWPDI
0501: LYFSIYKVSD WSIVDSGSAR LLAWDTCRDR FAILESVLPH RMPIIPKGGS SRKAKEAAAA AAQAAAAASA ASSASVQVRI LLDDGTSNIL MRSVGGRSEP
0601: VIGLHGGALL GIGYRTSRRI SPVAATAIST IQSMPLSGFG NSNVSSFSSY DDGFSSQKSA ESAPLNYQLY SWENFEPVGG MLPQPEWTAW DQTVEYCAFA
0701: YQQYMVISSL RPQYRYLGDV AIAHATGAVW HRRQLFVATP TTIECVFVDA GVSEIDIETR KMKEEMKLKE AQARAVAEHG ELALITVEGS QAAKQERISL
0801: RPPMLQVVRL ASFQNAPSVP PFLSLPRQSR GDSDDIMDER RVNEVAVGGG GVSVAVTRFP VEQKRPVGPL VVAGVRDGVL WLIDRYMCAH AISLNHPGIR
0901: CRCLAAYGDA VSAVKWASRL GREHHDDLAQ FMLGMGYATE ALHLPGISKR LEFDLAMQSN DLKRALHCLL TMSNSKDIGQ DGVGLDLSDI LSLTATKKED
1001: VVEAVEGIVK FAKEFLDLID AADATGHADI AREALKRLAT AGSVKGALQG HELRGLSLRL ANHGELTRLS GLVNNLISIG LGRESAFSAA VLGDNALMEK
1101: AWQDTGMLAE AVLHAHAHGR PTLKNLVQAW NKTLQKEVEK APSSKTDAAS AFLASLEDPK LTSLSDASRK PPIEILPPGM SSIFASITAP KKPLLTQKTA
1201: QPEVAKPLAL EEPTKPLAIE APPSSEAPQT ESAPETAAAA ESPAPETAAV AESPAPGTAA VAEAPASETA AAPVDGPVTE TVSEPPPVEK EETSLEEKSD
1301: PSSTPNTETA TSTENTSQTT TTPESVTTAP PEPITTAPPE TVTTTAVKPT ENAATERRVT NYPPIRSQPI DFDFLNG
0101: QLWRNRSAAA ESPSAVNHLT SAFTSPAPST KGRHFLVICC ENKAIFLDLV TMRGRDVPKQ ELDNKSLLCM EFLSRSSGGD GPLVAFGSTD GVIRVLSMIT
0201: WKLARRYTGG HKGSIYCLMN FMASSGEALL VSGGSDGLLV LWSADHGADS RELVPKLSLK AHDGGVVAVE LSRVSGSAPQ LITIGADKTL AIWDTMTFKE
0301: LRRIKPVPKL ACHSVASWCH PRAPNLDILT CVKDSHIWSI EHPTYSALTR PLCELSSLVP PQVLATHRKL RVYCMVAHPL QPHLVATGTN VGIIVSEFDP
0401: RAIPSAAPLP ALPGSRENSA IYILGRELKL LNFQLSNTAN PSLGNNSALS ESGLSKGDPG EQLTVKQTKK QIVAPVPHDS YSVLSVSSSG KYVAVVWPDI
0501: LYFSIYKVSD WSIVDSGSAR LLAWDTCRDR FAILESVLPH RMPIIPKGGS SRKAKEAAAA AAQAAAAASA ASSASVQVRI LLDDGTSNIL MRSVGGRSEP
0601: VIGLHGGALL GIGYRTSRRI SPVAATAIST IQSMPLSGFG NSNVSSFSSY DDGFSSQKSA ESAPLNYQLY SWENFEPVGG MLPQPEWTAW DQTVEYCAFA
0701: YQQYMVISSL RPQYRYLGDV AIAHATGAVW HRRQLFVATP TTIECVFVDA GVSEIDIETR KMKEEMKLKE AQARAVAEHG ELALITVEGS QAAKQERISL
0801: RPPMLQVVRL ASFQNAPSVP PFLSLPRQSR GDSDDIMDER RVNEVAVGGG GVSVAVTRFP VEQKRPVGPL VVAGVRDGVL WLIDRYMCAH AISLNHPGIR
0901: CRCLAAYGDA VSAVKWASRL GREHHDDLAQ FMLGMGYATE ALHLPGISKR LEFDLAMQSN DLKRALHCLL TMSNSKDIGQ DGVGLDLSDI LSLTATKKED
1001: VVEAVEGIVK FAKEFLDLID AADATGHADI AREALKRLAT AGSVKGALQG HELRGLSLRL ANHGELTRLS GLVNNLISIG LGRESAFSAA VLGDNALMEK
1101: AWQDTGMLAE AVLHAHAHGR PTLKNLVQAW NKTLQKEVEK APSSKTDAAS AFLASLEDPK LTSLSDASRK PPIEILPPGM SSIFASITAP KKPLLTQKTA
1201: QPEVAKPLAL EEPTKPLAIE APPSSEAPQT ESAPETAAAA ESPAPETAAV AESPAPGTAA VAEAPASETA AAPVDGPVTE TVSEPPPVEK EETSLEEKSD
1301: PSSTPNTETA TSTENTSQTT TTPESVTTAP PEPITTAPPE TVTTTAVKPT ENAATERRVT NYPPIRSQPI DFDFLNG
Arabidopsis Description
Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KIH8]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.