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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, plastid, extracellular, cytosol

Predictor Summary:
  • plastid 3
  • mitochondrion 1
  • endoplasmic reticulum 2
  • extracellular 2
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, endoplasmic reticulum, extracellular, plastid
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
Plant-mPloc:plastid
PProwler:secretory
WoLF PSORT:cytosol
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_05s0094g01650.t01 Wine grape cytosol 29.24 69.44
KRG96637 Soybean endoplasmic reticulum 45.61 6.9
Bra009790.1-P Field mustard mitochondrion 52.63 6.84
GSMUA_Achr1P28020_001 Banana mitochondrion 46.78 6.39
GSMUA_Achr6P21400_001 Banana mitochondrion 47.95 6.2
Bra036523.1-P Field mustard mitochondrion 50.88 6.2
KRH68370 Soybean endoplasmic reticulum 47.95 6.07
KXG33009 Sorghum mitochondrion 46.78 5.8
TraesCS3B01G263200.1 Wheat golgi, unclear 45.61 5.74
TraesCS3A01G236500.2 Wheat mitochondrion 45.03 5.68
TraesCS3D01G237000.1 Wheat mitochondrion 45.61 5.59
PGSC0003DMT400046936 Potato mitochondrion 45.61 5.53
Solyc01g102510.2.1 Tomato nucleus 45.61 5.44
Zm00001d044026_P011 Maize mitochondrion 46.2 5.43
HORVU3Hr1G058910.1 Barley plastid 45.61 5.34
Zm00001d011483_P004 Maize mitochondrion 46.78 5.34
Os01t0653350-00 Rice mitochondrion 0.0 0.0
KRG99486 Soybean endoplasmic reticulum 0.0 0.0
KRG89827 Soybean cytosol 0.0 0.0
Bra010799.1-P Field mustard cytosol 0.0 0.0
Protein Annotations
EnsemblPlants:Bra028077.1EnsemblPlants:Bra028077.1-PEnsemblPlantsGene:Bra028077GO:GO:0005575GO:GO:0016020GO:GO:0016021
PANTHER:PTHR45521SEG:segTMHMM:TMhelixUniParc:UPI000254286BUniProt:M4EH12MapMan:35.2
Description
AT5G24710 (E=1e-042) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); Has 46946 Blast hits to 23834 proteins in 1336 species: Archae - 160; Bacteria - 9572; Metazoa - 15324; Fungi - 6794; Plants - 1938; Viruses - 1106; Other Eukaryotes - 12052 (source: NCBI BLink).
Coordinates
chrA09:+:18586148..18586802
Molecular Weight (calculated)
18659.0 Da
IEP (calculated)
10.078
GRAVY (calculated)
0.567
Length
171 amino acids
Sequence
(BLAST)
001: MESDNFVRRI IVALPVKKKN ILLRFCVASF NSVMSFLISK SCSLILIRSC SITDCFSAIA SIFSRCASSD IAREALKRLA TAGSVKGALQ GHELRGLALR
101: LANHGELTRL SGLINNLISI GLGRESAFAA AVLGDNALME KAWQDTGMLA EAVLHAHVFF FLIRSFSFFF I
Best Arabidopsis Sequence Match ( AT5G24710.1 )
(BLAST)
0001: MLRARAFRQT NGKIVKIQVH PTHPWLVTAD DSDHVSVWNW EHRQVIYELK AGGVDERRLV GAKLEKLAEG ESDYKAKPTE AIRGGSVKQV KFYDDDVRYW
0101: QLWRNRSAAA ESPSAVNHLT SAFTSPAPST KGRHFLVICC ENKAIFLDLV TMRGRDVPKQ ELDNKSLLCM EFLSRSSGGD GPLVAFGSTD GVIRVLSMIT
0201: WKLARRYTGG HKGSIYCLMN FMASSGEALL VSGGSDGLLV LWSADHGADS RELVPKLSLK AHDGGVVAVE LSRVSGSAPQ LITIGADKTL AIWDTMTFKE
0301: LRRIKPVPKL ACHSVASWCH PRAPNLDILT CVKDSHIWSI EHPTYSALTR PLCELSSLVP PQVLATHRKL RVYCMVAHPL QPHLVATGTN VGIIVSEFDP
0401: RAIPSAAPLP ALPGSRENSA IYILGRELKL LNFQLSNTAN PSLGNNSALS ESGLSKGDPG EQLTVKQTKK QIVAPVPHDS YSVLSVSSSG KYVAVVWPDI
0501: LYFSIYKVSD WSIVDSGSAR LLAWDTCRDR FAILESVLPH RMPIIPKGGS SRKAKEAAAA AAQAAAAASA ASSASVQVRI LLDDGTSNIL MRSVGGRSEP
0601: VIGLHGGALL GIGYRTSRRI SPVAATAIST IQSMPLSGFG NSNVSSFSSY DDGFSSQKSA ESAPLNYQLY SWENFEPVGG MLPQPEWTAW DQTVEYCAFA
0701: YQQYMVISSL RPQYRYLGDV AIAHATGAVW HRRQLFVATP TTIECVFVDA GVSEIDIETR KMKEEMKLKE AQARAVAEHG ELALITVEGS QAAKQERISL
0801: RPPMLQVVRL ASFQNAPSVP PFLSLPRQSR GDSDDIMDER RVNEVAVGGG GVSVAVTRFP VEQKRPVGPL VVAGVRDGVL WLIDRYMCAH AISLNHPGIR
0901: CRCLAAYGDA VSAVKWASRL GREHHDDLAQ FMLGMGYATE ALHLPGISKR LEFDLAMQSN DLKRALHCLL TMSNSKDIGQ DGVGLDLSDI LSLTATKKED
1001: VVEAVEGIVK FAKEFLDLID AADATGHADI AREALKRLAT AGSVKGALQG HELRGLSLRL ANHGELTRLS GLVNNLISIG LGRESAFSAA VLGDNALMEK
1101: AWQDTGMLAE AVLHAHAHGR PTLKNLVQAW NKTLQKEVEK APSSKTDAAS AFLASLEDPK LTSLSDASRK PPIEILPPGM SSIFASITAP KKPLLTQKTA
1201: QPEVAKPLAL EEPTKPLAIE APPSSEAPQT ESAPETAAAA ESPAPETAAV AESPAPGTAA VAEAPASETA AAPVDGPVTE TVSEPPPVEK EETSLEEKSD
1301: PSSTPNTETA TSTENTSQTT TTPESVTTAP PEPITTAPPE TVTTTAVKPT ENAATERRVT NYPPIRSQPI DFDFLNG
Arabidopsis Description
Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KIH8]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.