Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 6
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G24710.1 | Thale cress | mitochondrion | 92.09 | 87.94 |
| Bra036523.1-P | Field mustard | mitochondrion | 93.08 | 87.24 |
| Bra010799.1-P | Field mustard | cytosol | 14.75 | 63.19 |
| Bra028077.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, plastid | 6.84 | 52.63 |
Protein Annotations
| EnsemblPlants:Bra009790.1 | EnsemblPlants:Bra009790.1-P | EnsemblPlantsGene:Bra009790 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001680 | InterPro:IPR017986 | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| PANTHER:PTHR45521 | PFscan:PS50082 | PFscan:PS50294 | ScanProsite:PS00678 | SEG:seg | SMART:SM00320 |
| SUPFAM:SSF50978 | UniParc:UPI000253F263 | UniProt:M4CZZ3 | MapMan:22.1.4.4 | : | : |
Description
AT5G24710 (E=0.0) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); Has 46946 Blast hits to 23834 proteins in 1336 species: Archae - 160; Bacteria - 9572; Metazoa - 15324; Fungi - 6794; Plants - 1938; Viruses - 1106; Other Eukaryotes - 12052 (source: NCBI BLink).
Coordinates
chrA06:-:17272631..17281296
Molecular Weight (calculated)
140736.0 Da
IEP (calculated)
6.227
GRAVY (calculated)
-0.129
Length
1315 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLRARAFRQT NGKIVKIQVH PTHPWIVTAD DTDHVSVWNW EHRQVIYELK AGGVDERRLV GAKLEKLAEG DSAAESPSAV NHLTSGFTSP APSTKGRHFL
0101: VICCENKAIF LDLVTMRGRD VPKSELDNRS LLCMEFLTRS SGGDGPLVAF GSTDGVIRVL SMITWKLARR YTGGHKGSIY CLMNFMASSG EALLVSGGSD
0201: GLLVLWSADH GSDSRELVPK LSLKAHDGGV VAVELSRVSG SAPQLITIGA DKTLAIWDTM TFKELRRIKP VPKLACHSVA SWCHPRAPNL DILTCVKDSH
0301: IWSIEHPTYS ALTRPLCELS SLVPPQVLAT HRKLRVYCMV AHPLQPHLVA TGTNVGIIVS EFDPRAIPSA APLPALSGSR ENSAVYILGR ELKLLNFQIS
0401: NTANPSLGNN SALSESGMAK GDSGEQLTVK QTKKQIVAPV PHDSYSVLSV SSSGKYVAVV WPDILYFSIY KVSDWTIVDS GSARLLAWDT CRDRFAILES
0501: VLPQRMPIIP KGGSSRKAKE AAAAAAQAAA AANAASSASV QVRILLDDGT SNILMRSVGG RSEPVIGLHG GALLGIGYRT SRRISPVAAS AISTIQSMPL
0601: SGFGNSNVSS FSSYDDGSSQ RSTESAPLNY QLYSWDNFEP VGGMLPQPEW TAWDQTVEYC AFAYQKYMVI SSLRPQYRYL GDVAISHATG AVWHRRQLFV
0701: ATPTTIECVF VDAGVSEIDI ETMKMKEEIK LKEAQARAVA EHGELALITV VRLASFQNAP SVPPFLSLPR QSRGDGDDMD ERSASEVAVG GGGVSVAVTR
0801: FPVEQKRPVG PLVVAGVRDG VLWLIDRYMC AHAISLSHPG IRCRCLAAYG DAVSAVKWAS RLGREHHDDL AQFMLGMGYA TEALHLPGIS KRLEFDLAMQ
0901: SNDLKRALHC LLTMSNSRDI GQDGLGLDLS DILSLTAEKK EDVVEAVEGI VKFAKEFLDL IDAADATGHA DIAREALKRL ATAGSVKGAL QGHELRGLAL
1001: RLANHGELTR LSGLINNLIS IGLGRESAFA AAVLGDNALM EKAWQDTGML AEAVLHAHAH GRPTLKNLVQ AWNKTLQKEV EQAPSSKTDA ASAFLASLED
1101: PKLTSLSDAS TKPPIEILPP GMSSIFASIS APKKPLPTLK PQEPTKPLAV EEPAKPLAIE APPSSEQPQT ESAPETAADP ESAAPETAAA SESAAPETAA
1201: VSESEARETA AGSESAAPET AAVAETAEHL DKPVTETVSE PPVVEETPSE EKSVPSSTPN TETALGATEV DSQTMPPPPP PEPVTTTVKP TENAATGRQQ
1301: VTYPPIRSQP IDFGF
0101: VICCENKAIF LDLVTMRGRD VPKSELDNRS LLCMEFLTRS SGGDGPLVAF GSTDGVIRVL SMITWKLARR YTGGHKGSIY CLMNFMASSG EALLVSGGSD
0201: GLLVLWSADH GSDSRELVPK LSLKAHDGGV VAVELSRVSG SAPQLITIGA DKTLAIWDTM TFKELRRIKP VPKLACHSVA SWCHPRAPNL DILTCVKDSH
0301: IWSIEHPTYS ALTRPLCELS SLVPPQVLAT HRKLRVYCMV AHPLQPHLVA TGTNVGIIVS EFDPRAIPSA APLPALSGSR ENSAVYILGR ELKLLNFQIS
0401: NTANPSLGNN SALSESGMAK GDSGEQLTVK QTKKQIVAPV PHDSYSVLSV SSSGKYVAVV WPDILYFSIY KVSDWTIVDS GSARLLAWDT CRDRFAILES
0501: VLPQRMPIIP KGGSSRKAKE AAAAAAQAAA AANAASSASV QVRILLDDGT SNILMRSVGG RSEPVIGLHG GALLGIGYRT SRRISPVAAS AISTIQSMPL
0601: SGFGNSNVSS FSSYDDGSSQ RSTESAPLNY QLYSWDNFEP VGGMLPQPEW TAWDQTVEYC AFAYQKYMVI SSLRPQYRYL GDVAISHATG AVWHRRQLFV
0701: ATPTTIECVF VDAGVSEIDI ETMKMKEEIK LKEAQARAVA EHGELALITV VRLASFQNAP SVPPFLSLPR QSRGDGDDMD ERSASEVAVG GGGVSVAVTR
0801: FPVEQKRPVG PLVVAGVRDG VLWLIDRYMC AHAISLSHPG IRCRCLAAYG DAVSAVKWAS RLGREHHDDL AQFMLGMGYA TEALHLPGIS KRLEFDLAMQ
0901: SNDLKRALHC LLTMSNSRDI GQDGLGLDLS DILSLTAEKK EDVVEAVEGI VKFAKEFLDL IDAADATGHA DIAREALKRL ATAGSVKGAL QGHELRGLAL
1001: RLANHGELTR LSGLINNLIS IGLGRESAFA AAVLGDNALM EKAWQDTGML AEAVLHAHAH GRPTLKNLVQ AWNKTLQKEV EQAPSSKTDA ASAFLASLED
1101: PKLTSLSDAS TKPPIEILPP GMSSIFASIS APKKPLPTLK PQEPTKPLAV EEPAKPLAIE APPSSEQPQT ESAPETAADP ESAAPETAAA SESAAPETAA
1201: VSESEARETA AGSESAAPET AAVAETAEHL DKPVTETVSE PPVVEETPSE EKSVPSSTPN TETALGATEV DSQTMPPPPP PEPVTTTVKP TENAATGRQQ
1301: VTYPPIRSQP IDFGF
0001: MLRARAFRQT NGKIVKIQVH PTHPWLVTAD DSDHVSVWNW EHRQVIYELK AGGVDERRLV GAKLEKLAEG ESDYKAKPTE AIRGGSVKQV KFYDDDVRYW
0101: QLWRNRSAAA ESPSAVNHLT SAFTSPAPST KGRHFLVICC ENKAIFLDLV TMRGRDVPKQ ELDNKSLLCM EFLSRSSGGD GPLVAFGSTD GVIRVLSMIT
0201: WKLARRYTGG HKGSIYCLMN FMASSGEALL VSGGSDGLLV LWSADHGADS RELVPKLSLK AHDGGVVAVE LSRVSGSAPQ LITIGADKTL AIWDTMTFKE
0301: LRRIKPVPKL ACHSVASWCH PRAPNLDILT CVKDSHIWSI EHPTYSALTR PLCELSSLVP PQVLATHRKL RVYCMVAHPL QPHLVATGTN VGIIVSEFDP
0401: RAIPSAAPLP ALPGSRENSA IYILGRELKL LNFQLSNTAN PSLGNNSALS ESGLSKGDPG EQLTVKQTKK QIVAPVPHDS YSVLSVSSSG KYVAVVWPDI
0501: LYFSIYKVSD WSIVDSGSAR LLAWDTCRDR FAILESVLPH RMPIIPKGGS SRKAKEAAAA AAQAAAAASA ASSASVQVRI LLDDGTSNIL MRSVGGRSEP
0601: VIGLHGGALL GIGYRTSRRI SPVAATAIST IQSMPLSGFG NSNVSSFSSY DDGFSSQKSA ESAPLNYQLY SWENFEPVGG MLPQPEWTAW DQTVEYCAFA
0701: YQQYMVISSL RPQYRYLGDV AIAHATGAVW HRRQLFVATP TTIECVFVDA GVSEIDIETR KMKEEMKLKE AQARAVAEHG ELALITVEGS QAAKQERISL
0801: RPPMLQVVRL ASFQNAPSVP PFLSLPRQSR GDSDDIMDER RVNEVAVGGG GVSVAVTRFP VEQKRPVGPL VVAGVRDGVL WLIDRYMCAH AISLNHPGIR
0901: CRCLAAYGDA VSAVKWASRL GREHHDDLAQ FMLGMGYATE ALHLPGISKR LEFDLAMQSN DLKRALHCLL TMSNSKDIGQ DGVGLDLSDI LSLTATKKED
1001: VVEAVEGIVK FAKEFLDLID AADATGHADI AREALKRLAT AGSVKGALQG HELRGLSLRL ANHGELTRLS GLVNNLISIG LGRESAFSAA VLGDNALMEK
1101: AWQDTGMLAE AVLHAHAHGR PTLKNLVQAW NKTLQKEVEK APSSKTDAAS AFLASLEDPK LTSLSDASRK PPIEILPPGM SSIFASITAP KKPLLTQKTA
1201: QPEVAKPLAL EEPTKPLAIE APPSSEAPQT ESAPETAAAA ESPAPETAAV AESPAPGTAA VAEAPASETA AAPVDGPVTE TVSEPPPVEK EETSLEEKSD
1301: PSSTPNTETA TSTENTSQTT TTPESVTTAP PEPITTAPPE TVTTTAVKPT ENAATERRVT NYPPIRSQPI DFDFLNG
0101: QLWRNRSAAA ESPSAVNHLT SAFTSPAPST KGRHFLVICC ENKAIFLDLV TMRGRDVPKQ ELDNKSLLCM EFLSRSSGGD GPLVAFGSTD GVIRVLSMIT
0201: WKLARRYTGG HKGSIYCLMN FMASSGEALL VSGGSDGLLV LWSADHGADS RELVPKLSLK AHDGGVVAVE LSRVSGSAPQ LITIGADKTL AIWDTMTFKE
0301: LRRIKPVPKL ACHSVASWCH PRAPNLDILT CVKDSHIWSI EHPTYSALTR PLCELSSLVP PQVLATHRKL RVYCMVAHPL QPHLVATGTN VGIIVSEFDP
0401: RAIPSAAPLP ALPGSRENSA IYILGRELKL LNFQLSNTAN PSLGNNSALS ESGLSKGDPG EQLTVKQTKK QIVAPVPHDS YSVLSVSSSG KYVAVVWPDI
0501: LYFSIYKVSD WSIVDSGSAR LLAWDTCRDR FAILESVLPH RMPIIPKGGS SRKAKEAAAA AAQAAAAASA ASSASVQVRI LLDDGTSNIL MRSVGGRSEP
0601: VIGLHGGALL GIGYRTSRRI SPVAATAIST IQSMPLSGFG NSNVSSFSSY DDGFSSQKSA ESAPLNYQLY SWENFEPVGG MLPQPEWTAW DQTVEYCAFA
0701: YQQYMVISSL RPQYRYLGDV AIAHATGAVW HRRQLFVATP TTIECVFVDA GVSEIDIETR KMKEEMKLKE AQARAVAEHG ELALITVEGS QAAKQERISL
0801: RPPMLQVVRL ASFQNAPSVP PFLSLPRQSR GDSDDIMDER RVNEVAVGGG GVSVAVTRFP VEQKRPVGPL VVAGVRDGVL WLIDRYMCAH AISLNHPGIR
0901: CRCLAAYGDA VSAVKWASRL GREHHDDLAQ FMLGMGYATE ALHLPGISKR LEFDLAMQSN DLKRALHCLL TMSNSKDIGQ DGVGLDLSDI LSLTATKKED
1001: VVEAVEGIVK FAKEFLDLID AADATGHADI AREALKRLAT AGSVKGALQG HELRGLSLRL ANHGELTRLS GLVNNLISIG LGRESAFSAA VLGDNALMEK
1101: AWQDTGMLAE AVLHAHAHGR PTLKNLVQAW NKTLQKEVEK APSSKTDAAS AFLASLEDPK LTSLSDASRK PPIEILPPGM SSIFASITAP KKPLLTQKTA
1201: QPEVAKPLAL EEPTKPLAIE APPSSEAPQT ESAPETAAAA ESPAPETAAV AESPAPGTAA VAEAPASETA AAPVDGPVTE TVSEPPPVEK EETSLEEKSD
1301: PSSTPNTETA TSTENTSQTT TTPESVTTAP PEPITTAPPE TVTTTAVKPT ENAATERRVT NYPPIRSQPI DFDFLNG
Arabidopsis Description
Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KIH8]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.