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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • nucleus 1
  • mitochondrion 6
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY19826 Canola mitochondrion 84.02 93.38
Bra009790.1-P Field mustard mitochondrion 87.94 92.09
CDX87116 Canola mitochondrion 89.32 89.45
Bra036523.1-P Field mustard mitochondrion 90.56 88.88
KRG96637 Soybean endoplasmic reticulum 67.97 82.83
KRG89827 Soybean cytosol 19.03 76.16
KRH68370 Soybean endoplasmic reticulum 73.78 75.15
GSMUA_Achr1P28020_001 Banana mitochondrion 68.19 75.0
KRG99486 Soybean endoplasmic reticulum 16.92 74.92
GSMUA_Achr6P21400_001 Banana mitochondrion 71.68 74.66
Bra010799.1-P Field mustard cytosol 16.27 72.96
HORVU1Hr1G042290.1 Barley mitochondrion 4.07 71.79
VIT_05s0094g01650.t01 Wine grape cytosol 3.7 70.83
TraesCS3A01G236500.2 Wheat mitochondrion 69.28 70.35
PGSC0003DMT400046936 Potato mitochondrion 72.04 70.3
Os01t0653800-02 Rice plasma membrane 70.01 70.01
TraesCS3B01G263200.1 Wheat golgi, unclear 69.06 69.93
KXG33009 Sorghum mitochondrion 69.79 69.64
Solyc01g102510.2.1 Tomato nucleus 71.68 68.83
TraesCS3D01G237000.1 Wheat mitochondrion 69.28 68.39
Zm00001d044026_P011 Maize mitochondrion 69.35 65.64
HORVU3Hr1G058910.1 Barley plastid 69.28 65.3
Zm00001d011483_P004 Maize mitochondrion 68.99 63.38
VIT_08s0056g00040.t01 Wine grape cytosol 75.02 56.63
Os05t0297001-01 Rice extracellular 2.32 45.71
Os01t0653350-00 Rice mitochondrion 5.3 31.88
Protein Annotations
Gene3D:2.130.10.10MapMan:22.1.4.4EntrezGene:832542ProteinID:AED93351.1ArrayExpress:AT5G24710EnsemblPlantsGene:AT5G24710
RefSeq:AT5G24710TAIR:AT5G24710RefSeq:AT5G24710-TAIR-GEnsemblPlants:AT5G24710.1TAIR:AT5G24710.1Unigene:At.22853
UniProt:F4KIH8GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005623
GO:GO:0005886GO:GO:0008150GO:GO:0016020InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986
RefSeq:NP_197859.4PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001017
PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064
PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611
PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010
PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046
PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137
PO:PO:0025022PO:PO:0025281ScanProsite:PS00678PFscan:PS50082PFscan:PS50294PANTHER:PTHR45521
SMART:SM00320SUPFAM:SSF50978UniParc:UPI000150584CInterPro:WD40/YVTN_repeat-like_dom_sfInterPro:WD40_repeatInterPro:WD40_repeat_CS
InterPro:WD40_repeat_domInterPro:WD40_repeat_dom_sfSEG:seg:::
Description
Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KIH8]
Coordinates
chr5:-:8458847..8468173
Molecular Weight (calculated)
148078.0 Da
IEP (calculated)
6.710
GRAVY (calculated)
-0.163
Length
1377 amino acids
Sequence
(BLAST)
0001: MLRARAFRQT NGKIVKIQVH PTHPWLVTAD DSDHVSVWNW EHRQVIYELK AGGVDERRLV GAKLEKLAEG ESDYKAKPTE AIRGGSVKQV KFYDDDVRYW
0101: QLWRNRSAAA ESPSAVNHLT SAFTSPAPST KGRHFLVICC ENKAIFLDLV TMRGRDVPKQ ELDNKSLLCM EFLSRSSGGD GPLVAFGSTD GVIRVLSMIT
0201: WKLARRYTGG HKGSIYCLMN FMASSGEALL VSGGSDGLLV LWSADHGADS RELVPKLSLK AHDGGVVAVE LSRVSGSAPQ LITIGADKTL AIWDTMTFKE
0301: LRRIKPVPKL ACHSVASWCH PRAPNLDILT CVKDSHIWSI EHPTYSALTR PLCELSSLVP PQVLATHRKL RVYCMVAHPL QPHLVATGTN VGIIVSEFDP
0401: RAIPSAAPLP ALPGSRENSA IYILGRELKL LNFQLSNTAN PSLGNNSALS ESGLSKGDPG EQLTVKQTKK QIVAPVPHDS YSVLSVSSSG KYVAVVWPDI
0501: LYFSIYKVSD WSIVDSGSAR LLAWDTCRDR FAILESVLPH RMPIIPKGGS SRKAKEAAAA AAQAAAAASA ASSASVQVRI LLDDGTSNIL MRSVGGRSEP
0601: VIGLHGGALL GIGYRTSRRI SPVAATAIST IQSMPLSGFG NSNVSSFSSY DDGFSSQKSA ESAPLNYQLY SWENFEPVGG MLPQPEWTAW DQTVEYCAFA
0701: YQQYMVISSL RPQYRYLGDV AIAHATGAVW HRRQLFVATP TTIECVFVDA GVSEIDIETR KMKEEMKLKE AQARAVAEHG ELALITVEGS QAAKQERISL
0801: RPPMLQVVRL ASFQNAPSVP PFLSLPRQSR GDSDDIMDER RVNEVAVGGG GVSVAVTRFP VEQKRPVGPL VVAGVRDGVL WLIDRYMCAH AISLNHPGIR
0901: CRCLAAYGDA VSAVKWASRL GREHHDDLAQ FMLGMGYATE ALHLPGISKR LEFDLAMQSN DLKRALHCLL TMSNSKDIGQ DGVGLDLSDI LSLTATKKED
1001: VVEAVEGIVK FAKEFLDLID AADATGHADI AREALKRLAT AGSVKGALQG HELRGLSLRL ANHGELTRLS GLVNNLISIG LGRESAFSAA VLGDNALMEK
1101: AWQDTGMLAE AVLHAHAHGR PTLKNLVQAW NKTLQKEVEK APSSKTDAAS AFLASLEDPK LTSLSDASRK PPIEILPPGM SSIFASITAP KKPLLTQKTA
1201: QPEVAKPLAL EEPTKPLAIE APPSSEAPQT ESAPETAAAA ESPAPETAAV AESPAPGTAA VAEAPASETA AAPVDGPVTE TVSEPPPVEK EETSLEEKSD
1301: PSSTPNTETA TSTENTSQTT TTPESVTTAP PEPITTAPPE TVTTTAVKPT ENAATERRVT NYPPIRSQPI DFDFLNG
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.