Skip to main content
crop-pal logo
Field mustard
Search for another protein from :
Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • mitochondrion 4
  • cytosol 3
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra002727.1-P
Bra006819.1-P
Bra012247.1-P
Bra015169.1-P
Bra016455.1-P
Bra022067.1-P
Bra025842.1-P
Bra026139.1-P
Bra026769.1-P
Bra036092.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G24710.1 Bra026139.1-P AT1G15370.1 24529374
AT5G24710.1 Bra026769.1-P AT1G15370.1 24529374
AT5G24710.1 Bra012247.1-P AT1G20760.1 24529374
AT5G24710.1 Bra016455.1-P AT1G20760.1 24529374
AT5G24710.1 Bra025842.1-P AT1G20760.1 24529374
AT5G24710.1 Bra015169.1-P AT2G05830.1 24529374
AT5G24710.1 Bra022067.1-P AT3G01780.1 24529374
AT5G24710.1 Bra036092.1-P AT3G50590.1 24529374
AT5G24710.1 Bra002727.1-P AT5G57460.1 24529374
AT5G24710.1 Bra006819.1-P AT5G57460.1 24529374
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX87116 Canola mitochondrion 76.87 17.16
Bra036523.1-P Field mustard mitochondrion 76.87 16.82
AT5G24710.1 Thale cress mitochondrion 72.96 16.27
Bra009790.1-P Field mustard mitochondrion 63.19 14.75
Bra028077.1-P Field mustard cytosol, endoplasmic reticulum, extracellular, plastid 0.0 0.0
Protein Annotations
EnsemblPlants:Bra010799.1EnsemblPlants:Bra010799.1-PEnsemblPlantsGene:Bra010799GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:WD40_repeat_dom_sfPANTHER:PTHR45521SUPFAM:SSF50978UniParc:UPI00025470CDUniProt:M4D2U6MapMan:35.2
Description
AT5G24710 (E=6e-113) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); Has 46946 Blast hits to 23834 proteins in 1336 species: Archae - 160; Bacteria - 9572; Metazoa - 15324; Fungi - 6794; Plants - 1938; Viruses - 1106; Other Eukaryotes - 12052 (source: NCBI BLink).
Coordinates
chrA08:-:16494052..16496178
Molecular Weight (calculated)
34399.0 Da
IEP (calculated)
4.603
GRAVY (calculated)
-0.992
Length
307 amino acids
Sequence
(BLAST)
001: MLRARAFRQT NNKIVKIQVH PTHPWLVTAD DTDHVSVWNW EHRQVIYELK AGGVDERRLV GAKLEKLAEG DSDYKGKPTE AIRGGSVKQV KFYDDDVRYW
101: QLWRNRSAAA ESPSAVDHLT SGFTSPAPST KGRHFLVICC ENKAIFLDLV TMRGRDVPKS ELDNRSLVCM EFLTRSSAGD GPLVAFGSTD GVIRVLSMIT
201: WKLARSMEME NRGGDGEPEM ENRGGDGEPE MENRGGDGEP EMENRGGDGE PEMENRGGDG EPEMENRGGD GEPEMENRGG DGEPEMENRD RDGNRERTRE
301: KEMENPD
Best Arabidopsis Sequence Match ( AT5G24710.1 )
(BLAST)
0001: MLRARAFRQT NGKIVKIQVH PTHPWLVTAD DSDHVSVWNW EHRQVIYELK AGGVDERRLV GAKLEKLAEG ESDYKAKPTE AIRGGSVKQV KFYDDDVRYW
0101: QLWRNRSAAA ESPSAVNHLT SAFTSPAPST KGRHFLVICC ENKAIFLDLV TMRGRDVPKQ ELDNKSLLCM EFLSRSSGGD GPLVAFGSTD GVIRVLSMIT
0201: WKLARRYTGG HKGSIYCLMN FMASSGEALL VSGGSDGLLV LWSADHGADS RELVPKLSLK AHDGGVVAVE LSRVSGSAPQ LITIGADKTL AIWDTMTFKE
0301: LRRIKPVPKL ACHSVASWCH PRAPNLDILT CVKDSHIWSI EHPTYSALTR PLCELSSLVP PQVLATHRKL RVYCMVAHPL QPHLVATGTN VGIIVSEFDP
0401: RAIPSAAPLP ALPGSRENSA IYILGRELKL LNFQLSNTAN PSLGNNSALS ESGLSKGDPG EQLTVKQTKK QIVAPVPHDS YSVLSVSSSG KYVAVVWPDI
0501: LYFSIYKVSD WSIVDSGSAR LLAWDTCRDR FAILESVLPH RMPIIPKGGS SRKAKEAAAA AAQAAAAASA ASSASVQVRI LLDDGTSNIL MRSVGGRSEP
0601: VIGLHGGALL GIGYRTSRRI SPVAATAIST IQSMPLSGFG NSNVSSFSSY DDGFSSQKSA ESAPLNYQLY SWENFEPVGG MLPQPEWTAW DQTVEYCAFA
0701: YQQYMVISSL RPQYRYLGDV AIAHATGAVW HRRQLFVATP TTIECVFVDA GVSEIDIETR KMKEEMKLKE AQARAVAEHG ELALITVEGS QAAKQERISL
0801: RPPMLQVVRL ASFQNAPSVP PFLSLPRQSR GDSDDIMDER RVNEVAVGGG GVSVAVTRFP VEQKRPVGPL VVAGVRDGVL WLIDRYMCAH AISLNHPGIR
0901: CRCLAAYGDA VSAVKWASRL GREHHDDLAQ FMLGMGYATE ALHLPGISKR LEFDLAMQSN DLKRALHCLL TMSNSKDIGQ DGVGLDLSDI LSLTATKKED
1001: VVEAVEGIVK FAKEFLDLID AADATGHADI AREALKRLAT AGSVKGALQG HELRGLSLRL ANHGELTRLS GLVNNLISIG LGRESAFSAA VLGDNALMEK
1101: AWQDTGMLAE AVLHAHAHGR PTLKNLVQAW NKTLQKEVEK APSSKTDAAS AFLASLEDPK LTSLSDASRK PPIEILPPGM SSIFASITAP KKPLLTQKTA
1201: QPEVAKPLAL EEPTKPLAIE APPSSEAPQT ESAPETAAAA ESPAPETAAV AESPAPGTAA VAEAPASETA AAPVDGPVTE TVSEPPPVEK EETSLEEKSD
1301: PSSTPNTETA TSTENTSQTT TTPESVTTAP PEPITTAPPE TVTTTAVKPT ENAATERRVT NYPPIRSQPI DFDFLNG
Arabidopsis Description
Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KIH8]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.