Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77930 | Canola | cytosol | 99.81 | 95.22 |
| AT3G50590.1 | Thale cress | cytosol | 92.8 | 89.47 |
| KRH28498 | Soybean | cytosol | 10.48 | 76.53 |
| Solyc02g090570.2.1 | Tomato | nucleus | 75.19 | 72.22 |
| KRH57890 | Soybean | endoplasmic reticulum | 72.62 | 69.67 |
| KRH04644 | Soybean | endoplasmic reticulum | 72.24 | 69.3 |
| KRH76964 | Soybean | nucleus | 71.34 | 68.43 |
| GSMUA_Achr10P... | Banana | cytosol | 69.09 | 68.17 |
| KXG38043 | Sorghum | cytosol | 68.44 | 64.31 |
| Os09t0407950-01 | Rice | plasma membrane | 40.49 | 63.44 |
| TraesCS7A01G009900.1 | Wheat | cytosol | 65.55 | 63.43 |
| TraesCS7D01G009600.1 | Wheat | golgi | 66.45 | 63.36 |
| TraesCS4A01G485300.1 | Wheat | cytosol | 66.45 | 63.28 |
| Zm00001d033368_P007 | Maize | cytosol | 66.45 | 62.44 |
| HORVU5Hr1G067090.1 | Barley | cytosol | 66.52 | 61.32 |
| Os09t0408000-01 | Rice | cytosol, nucleus | 19.02 | 60.91 |
| VIT_00s0961g00020.t01 | Wine grape | cytosol, extracellular, plastid | 8.42 | 53.69 |
| VIT_00s0783g00010.t01 | Wine grape | cytosol | 17.61 | 48.32 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:22.1.4.4 | EnsemblPlantsGene:Bra036092 | EnsemblPlants:Bra036092.1 | EnsemblPlants:Bra036092.1-P | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0016020 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:M4F4T8 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR19878 | PANTHER:PTHR19878:SF4 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0002542BE5 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : |
Description
AT3G50590 (E=0.0) | nucleotide binding
Coordinates
chrA09:+:25232692..25240476
Molecular Weight (calculated)
169218.0 Da
IEP (calculated)
7.952
GRAVY (calculated)
-0.177
Length
1556 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEWATVQHLD LRHVGRGVSK PLQPHTAAFH PTQAVIAVAV GSHIMEFDAL TGCKIASIDI GSPAVKMLYS PTSSNAVVAI LEDCTIRSCD FETEQTCVLH
0101: SPEKRSEHIS SDTEVHLAVT PLQPVVFFGF PKRMSVTVVG TVEGGRAPTK IKTDLKKPIV NIACHPRLPV LYVAYAEGLI RAYNIHTYAV HYTLQLDNTI
0201: KLIGASAFAF HPTLEWIFVG DRRGTLLAWD VSTERPNMIG ITQVGSQPIT SISWLPMLRV LVTVSKDGSL QVWKTRVIIN PNRPSTQTNF FEPAAMESID
0301: IPRILSQQGG EAVYPLPRIK TLEVHTKLNL AALIFANMAG NENTQNRAAQ TREGRKQLFA VLQSARGSSA SVLKEKLSSM GSSGILAEHQ LQALLQEQHH
0401: KGQNQLTISD IARKAFLYSH FMEGHAKTAP ISRLPLITVM DTKDQLKDIP VCQPFHLELN FFNKPNRVLH YPVRAFYIEG LNLMAHNLCS GTDSIYKKLY
0501: TSIPANVEYH SKQIVYSRKR NLFLVVYEFS GATNEVVLYW ENTGSQLPNS KGSTAKGCDA AFIGPNDDQF VILDEDKTGL SMYILPKLTT IEENEKNLLS
0601: EENQTKEENP SAIQGPQQFL FETEVDRVFS TPIESTLMFA CNGTQLGLAK LFQGYRLSAS DGHYISTQGE GRKSIRSLLW VGPALLFSTT TAVCLLGWDG
0701: KVRTILSIST PYAALVGALN DRLLLANPTD ISPKQKKGIE IKCCLVGLLE PLLIGFSTMQ QTFQQKLDLS EILYQITTRF DSLRITPRSL DILASSPPVC
0801: GDLAVSLAQA GPQFNQVLRC TYGIKALRFS TALSVLKDEF LRSRDYPKCP PTSLLFQRFR QLGYACIKYG QFDYAKETFE VIGDNESLLD LFICHLNPSA
0901: MRRLAQKLEE ESGDPELRRY CERILRARST GWTQGIFANF AAESMVPKGP EWGGGNWDIK TPTDMKSIPQ WELAGEVMPY MKSDDGTIPS IVADHIGVYL
1001: GCVKGRVNVV EIKEDSLVSK PGGLLSSLGK PLSDKPLALP AGESSSLMGL ESLGKQNVAD EQAKAAEEFK KTMYGAAGDG SSSDEEGVPK TKKLQIRIRE
1101: KPTSTTVDVN KLKEATRTFK LGDGLGLPMS RTKSTSAGSQ DLGEMLSQPS PSTTAPVSAS APVDPFAMSS WTQPPQPMSQ PAPSGSTGMV AGPIPEDFFQ
1201: NTIPSVEVAK TLLPAGTYLS KMDQIAQAAK NAPNQANNPT QPDIGLPGGG VPPTTQQPGV PYQTVGLPDG GVPPQFPGQT QGMPQLPGQT QGAPQVPVYS
1301: QPLDLSVLGV PNTESGKPPG QPTSPPASVR PGQVPRGAAA PLCFKTGLAH LEQNQLPDAL SCFDEAFLAL AKDQSRGADI KAQATICAQY KIAVTLLREI
1401: LRLQRVQGAS ALSAKDEMAR LSRHLASLPL LAKHRINCIR TAIKRNMEVQ NYGYSKQMLE LLLSKAPASK QEELRGLVDL CVQRGTSNKS IDPLEDPSQL
1501: CSATLSRLST IGYDVCDLCG AKFAALSSPG CIICGMGSIK RSDALAGPAP VSTPFG
0101: SPEKRSEHIS SDTEVHLAVT PLQPVVFFGF PKRMSVTVVG TVEGGRAPTK IKTDLKKPIV NIACHPRLPV LYVAYAEGLI RAYNIHTYAV HYTLQLDNTI
0201: KLIGASAFAF HPTLEWIFVG DRRGTLLAWD VSTERPNMIG ITQVGSQPIT SISWLPMLRV LVTVSKDGSL QVWKTRVIIN PNRPSTQTNF FEPAAMESID
0301: IPRILSQQGG EAVYPLPRIK TLEVHTKLNL AALIFANMAG NENTQNRAAQ TREGRKQLFA VLQSARGSSA SVLKEKLSSM GSSGILAEHQ LQALLQEQHH
0401: KGQNQLTISD IARKAFLYSH FMEGHAKTAP ISRLPLITVM DTKDQLKDIP VCQPFHLELN FFNKPNRVLH YPVRAFYIEG LNLMAHNLCS GTDSIYKKLY
0501: TSIPANVEYH SKQIVYSRKR NLFLVVYEFS GATNEVVLYW ENTGSQLPNS KGSTAKGCDA AFIGPNDDQF VILDEDKTGL SMYILPKLTT IEENEKNLLS
0601: EENQTKEENP SAIQGPQQFL FETEVDRVFS TPIESTLMFA CNGTQLGLAK LFQGYRLSAS DGHYISTQGE GRKSIRSLLW VGPALLFSTT TAVCLLGWDG
0701: KVRTILSIST PYAALVGALN DRLLLANPTD ISPKQKKGIE IKCCLVGLLE PLLIGFSTMQ QTFQQKLDLS EILYQITTRF DSLRITPRSL DILASSPPVC
0801: GDLAVSLAQA GPQFNQVLRC TYGIKALRFS TALSVLKDEF LRSRDYPKCP PTSLLFQRFR QLGYACIKYG QFDYAKETFE VIGDNESLLD LFICHLNPSA
0901: MRRLAQKLEE ESGDPELRRY CERILRARST GWTQGIFANF AAESMVPKGP EWGGGNWDIK TPTDMKSIPQ WELAGEVMPY MKSDDGTIPS IVADHIGVYL
1001: GCVKGRVNVV EIKEDSLVSK PGGLLSSLGK PLSDKPLALP AGESSSLMGL ESLGKQNVAD EQAKAAEEFK KTMYGAAGDG SSSDEEGVPK TKKLQIRIRE
1101: KPTSTTVDVN KLKEATRTFK LGDGLGLPMS RTKSTSAGSQ DLGEMLSQPS PSTTAPVSAS APVDPFAMSS WTQPPQPMSQ PAPSGSTGMV AGPIPEDFFQ
1201: NTIPSVEVAK TLLPAGTYLS KMDQIAQAAK NAPNQANNPT QPDIGLPGGG VPPTTQQPGV PYQTVGLPDG GVPPQFPGQT QGMPQLPGQT QGAPQVPVYS
1301: QPLDLSVLGV PNTESGKPPG QPTSPPASVR PGQVPRGAAA PLCFKTGLAH LEQNQLPDAL SCFDEAFLAL AKDQSRGADI KAQATICAQY KIAVTLLREI
1401: LRLQRVQGAS ALSAKDEMAR LSRHLASLPL LAKHRINCIR TAIKRNMEVQ NYGYSKQMLE LLLSKAPASK QEELRGLVDL CVQRGTSNKS IDPLEDPSQL
1501: CSATLSRLST IGYDVCDLCG AKFAALSSPG CIICGMGSIK RSDALAGPAP VSTPFG
0001: MEWATVQHLD LRHVGRGVSK PLQPHTAAFH PSQAVIAVAV GSHIMEFDAL TGCKIASIDI GSPAVRMLYS PTSSNAVVAI LEDCTIRSCD FETEQTCVLH
0101: SPEKRSEHIS SDTEVHLAVT PLQPVVFFGF PKRMSVTVVG TVEGGRAPTK IKTDLKKPIV NIACHPRLPV LYVAYAEGLI RAYNIHTYAV HYTLQLDNTI
0201: KLIGASSFAF HPTLEWIFVG DRRGTLLAWD VSTERPNMIG ITQVGSQPIT SISWLPMLRV LVTVSKDGSL QVWKTRVIIN PNRPSTQTNF FEPAAMESID
0301: IPKILSQQGG EAVYPLPRIK TLEVHPKLNL AALIFANMVG NENTQNRAAQ TREGRKQLFA VLQSARGSSA SVLKEKLSSM GSSGILAEHQ LQALLQEHKG
0401: QSQLTISDIA RKAFLYSHFM EGHAKTAPIS RLPLITVVDT KDQLKDIPVC QPFHLELNFF NKPNRVLHYP VRSFYIEGLN LMAHNLCSGT DNIYKKLYTS
0501: IPGNVEYHSK HIVYSRKRHL FLVVFEFSGA TNEVVLYWEN TGSQLPNSKG STAKGCDAAF IGPNDDQFAI LDEDKTGLSM YILPKLTTME ENEKNLLSEE
0601: NQKKEADPSG IQGPQQFMFE TEVDRVFSTP IESTLMFACN GTQIGLAKLF QGYRLSASDG HYISTQGEGR KSIKLKKHEI ALQVQWQETP RGYVAGILTT
0701: QRVLMVSADF DILASSSTKY DRGLPSFRSL LWVGPALLFS TTTAVCLLGW DGKVRTILSI STPYAALVGA LNDRLLLAHP TDISPKQKKG IEIKSCLVGL
0801: LEPLLIGFST MQQTFEQKVD LSEILYQITT RFDSLRITPR SLDILARSAP VCGDLAVSLA QAGPQFNQVL RCAYAIKALR FSTALSVLKD EFLRSRDYPK
0901: CPPTSLLFQR FRQLGYACIK YGQFDSAKET FEVIGDYESM LDLFICHLNP SAMRRLAQKL EEESGDPELR RYCERILRVR STGWTQGIFA NFAAESMVPK
1001: GPEWGGGNWE IKTPTDMKSI PKWELAGEVM PYMKNEDGTI PSIVADHIGV YLGCVKGRVN VVEIKEDSLV SKPGGLSLLG KPVSDKPLAL PAGESSSMMG
1101: LESLGKQNVA DEQAKAAEEF KKTMYGATGD GSSSDEEGVT KPKKLQIRIR EKPTSTTVDV NKLKEAAKTF KLGDGLGLTM SRTKSINAGS QDLGQMLSQP
1201: SSSTVATTTA PSSASAPVDP FAMSSWTQQP QPVSQPAPPG VAAPIPEDFF QNTIPSVEVA KTLPPPGTYL SKMDQAARAA IAAQGGPNQA NNTPLPDIGL
1301: PDGGVPQQYP QQTSQQPGAP FQTVGLPDGG VRQQYPGQNQ VPSQVPVSTQ PLDLSVLGVP NTGDSGKPPG QPQSPPASVR PGQVPRGAAA PVCFKTGLAH
1401: LEQNQLPDAL SCFDEAFLAL AKDQSRGADI KAQATICAQY KIAVTLLREI LRLQRVQGAS ALSAKDEMAR LSRHLASLPL LAKHRINCIR TAIKRNMEVQ
1501: NYGYSKQMLE LLLSKAPASK QEELRGLVDL CVQRGTSNKS IDPLEDPSQL CSATLSRLST IGYDVCDLCG AKFAALSSPG CIICGMGSIK RSDALAGPAP
1601: VSTPFG
0101: SPEKRSEHIS SDTEVHLAVT PLQPVVFFGF PKRMSVTVVG TVEGGRAPTK IKTDLKKPIV NIACHPRLPV LYVAYAEGLI RAYNIHTYAV HYTLQLDNTI
0201: KLIGASSFAF HPTLEWIFVG DRRGTLLAWD VSTERPNMIG ITQVGSQPIT SISWLPMLRV LVTVSKDGSL QVWKTRVIIN PNRPSTQTNF FEPAAMESID
0301: IPKILSQQGG EAVYPLPRIK TLEVHPKLNL AALIFANMVG NENTQNRAAQ TREGRKQLFA VLQSARGSSA SVLKEKLSSM GSSGILAEHQ LQALLQEHKG
0401: QSQLTISDIA RKAFLYSHFM EGHAKTAPIS RLPLITVVDT KDQLKDIPVC QPFHLELNFF NKPNRVLHYP VRSFYIEGLN LMAHNLCSGT DNIYKKLYTS
0501: IPGNVEYHSK HIVYSRKRHL FLVVFEFSGA TNEVVLYWEN TGSQLPNSKG STAKGCDAAF IGPNDDQFAI LDEDKTGLSM YILPKLTTME ENEKNLLSEE
0601: NQKKEADPSG IQGPQQFMFE TEVDRVFSTP IESTLMFACN GTQIGLAKLF QGYRLSASDG HYISTQGEGR KSIKLKKHEI ALQVQWQETP RGYVAGILTT
0701: QRVLMVSADF DILASSSTKY DRGLPSFRSL LWVGPALLFS TTTAVCLLGW DGKVRTILSI STPYAALVGA LNDRLLLAHP TDISPKQKKG IEIKSCLVGL
0801: LEPLLIGFST MQQTFEQKVD LSEILYQITT RFDSLRITPR SLDILARSAP VCGDLAVSLA QAGPQFNQVL RCAYAIKALR FSTALSVLKD EFLRSRDYPK
0901: CPPTSLLFQR FRQLGYACIK YGQFDSAKET FEVIGDYESM LDLFICHLNP SAMRRLAQKL EEESGDPELR RYCERILRVR STGWTQGIFA NFAAESMVPK
1001: GPEWGGGNWE IKTPTDMKSI PKWELAGEVM PYMKNEDGTI PSIVADHIGV YLGCVKGRVN VVEIKEDSLV SKPGGLSLLG KPVSDKPLAL PAGESSSMMG
1101: LESLGKQNVA DEQAKAAEEF KKTMYGATGD GSSSDEEGVT KPKKLQIRIR EKPTSTTVDV NKLKEAAKTF KLGDGLGLTM SRTKSINAGS QDLGQMLSQP
1201: SSSTVATTTA PSSASAPVDP FAMSSWTQQP QPVSQPAPPG VAAPIPEDFF QNTIPSVEVA KTLPPPGTYL SKMDQAARAA IAAQGGPNQA NNTPLPDIGL
1301: PDGGVPQQYP QQTSQQPGAP FQTVGLPDGG VRQQYPGQNQ VPSQVPVSTQ PLDLSVLGVP NTGDSGKPPG QPQSPPASVR PGQVPRGAAA PVCFKTGLAH
1401: LEQNQLPDAL SCFDEAFLAL AKDQSRGADI KAQATICAQY KIAVTLLREI LRLQRVQGAS ALSAKDEMAR LSRHLASLPL LAKHRINCIR TAIKRNMEVQ
1501: NYGYSKQMLE LLLSKAPASK QEELRGLVDL CVQRGTSNKS IDPLEDPSQL CSATLSRLST IGYDVCDLCG AKFAALSSPG CIICGMGSIK RSDALAGPAP
1601: VSTPFG
Arabidopsis Description
Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J0P2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.