Factsheet for Os09t0407950-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 4
mitochondrion 1
peroxisome 1
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 19502382
nucleus: 23777608
plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19502382 doi

M Fujiwara, S Hamada, M Hiratsuka, Y Fukao, T Kawasaki, K Shimamoto

Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0653350-00
Os01t0653800-02
Os02t0793100-01
Os03t0130500-01
Os05t0297001-01
Os06t0728600-00
Os08t0243900-01
Os11t0175900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50590.1	Os03t0130500-01	AT1G20760.1	24529374
AT3G50590.1	Os06t0728600-00	AT1G20760.1	24529374
AT3G50590.1	Os02t0793100-01	AT3G01780.1	24529374
AT3G50590.1	Os11t0175900-01	AT3G01780.1	24529374
AT3G50590.1	Os01t0653350-00	AT5G24710.1	24529374
AT3G50590.1	Os01t0653800-02	AT5G24710.1	24529374
AT3G50590.1	Os05t0297001-01	AT5G24710.1	24529374
AT3G50590.1	Os08t0243900-01	AT5G57460.1	24529374

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G485300.1	Wheat	cytosol	88.22	53.61
TraesCS7D01G009600.1	Wheat	golgi	88.02	53.55
KXG38043	Sorghum	cytosol	88.92	53.32
TraesCS7A01G009900.1	Wheat	cytosol	85.1	52.55
HORVU5Hr1G067090.1	Barley	cytosol	88.82	52.25
Zm00001d033368_P007	Maize	cytosol	85.1	51.03
GSMUA_Achr10P...	Banana	cytosol	72.51	45.66
Solyc02g090570.2.1	Tomato	nucleus	68.48	41.98
KRH76964	Soybean	nucleus	66.87	40.94
KRH04644	Soybean	endoplasmic reticulum	66.57	40.75
KRH57890	Soybean	endoplasmic reticulum	66.47	40.69
AT3G50590.1	Thale cress	cytosol	65.86	40.52
Bra036092.1-P	Field mustard	cytosol	63.44	40.49
CDX77930	Canola	cytosol	66.36	40.4
CDY17791	Canola	cytosol	66.26	40.15
KRH28498	Soybean	cytosol	3.32	15.49
CDY26515	Canola	cytosol, nucleus, plastid	0.7	2.77
VIT_00s0961g00020.t01	Wine grape	cytosol, extracellular, plastid	0.4	1.64
Os09t0408000-01	Rice	cytosol, nucleus	0.3	0.62
VIT_00s0783g00010.t01	Wine grape	cytosol	0.0	0.0
VIT_00s1373g00010.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.130.10.10	MapMan:22.1.4.4	UniProt:A0A0P0XMB6	ProteinID:BAT08023.1	ncoils:Coil	GO:GO:0003674
GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020
GO:GO:0016192	GO:GO:0030126	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlantsGene:Os09g0407950
EnsemblPlants:Os09t0407950-01	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19878	PANTHER:PTHR19878:SF4	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0001C7AEF5	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

Similar to transducin family protein / WD-40 repeat family protein. (Os09t0407950-01)

Coordinates

chr9:+:14404531..14413663

Molecular Weight (calculated)

109685.0 Da

IEP (calculated)

9.181

GRAVY (calculated)

-0.058

Length

993 amino acids

Sequence
(BLAST)

001: MLQIVSSSKL VQPAGPLPPQ HKSTDRRSPA PPDLTPERPD PPPPAMEWAT VQHLDLRHAG GRRGASARPL QPHAAAFRAS QAIVAVAIGT HVVEFDALTG
101: SKIASIDLGA RVVRMAYSPT ASHIVIAILE DATIRSCDFA TEQTLVLHSP EKKTDHVSID TEVHLALTPL EPIVFFGFHK RMSVTVVGTV EGGRPPTKIK
201: TDLKKPVVNL ACHPRLPVLY VAYAEGLIRA YNIQTYVVHY TLQLAVDSTI KLVGAGAFGF HPTLEWIFIG DRGGTLLAWD VSTERPSMIG ITQAGSQPIT
301: SVSWLPTLRL LVTISKDGAL QVWKTRVIIN PNRQPMETHF FEHAAIETMD ITKILTLQGG EAVYPLPRIR NLAVHPKFNL AAVIFADMSG TEAAKNKAAY
401: TREGRRQLFA VLQGARGSTA AVLKEKLLAL GSSGILAEHQ LQAQLQEQHL KGQSQLTISD IARKAFLHSH FMEGHAKSGP ISRLPLITIS DSGNLLRDVP
501: VCQPFHLELN FFNQENRVVQ YPVRAFYLDG FNLMAHNLSS GADNLYKKLY STIPSNMECH PKNIVYSPKQ HMFLVVFELS GPNGVAHEVV LYWEQTDLQT
601: VNSKGSSIKG RDAAFLGPDD NQYAILEEDR TSLNLFNLKA VATKEALENN AAVLEENTFA DNVTNPTERQ GPMQFTFESE VDRIFSAPLE STMLYVISGK
701: HIGLAKLLQG YRLSADNGVS ITTKTEGKKF IKLKPNESVL QVHWQTTLRG PVVGILTTQR VMIASADLDI LSSSSTKYDR GLPSYRSMLW VGPALIFSSA
801: TAISMLGWDN KVRSILSTSF PRSVLLGALN DRLLLVNPTD INPRQKKGVE IRSCLIGLLE PLLIGFATMQ QYFEQKLDLS EVLYQITSRF DSLRVTPRSL
901: DILAKGPPVC GDLAVSLSQA GPQFTQIMRC NYAIKALRFS TALSILKDEF LRSRDYPQCP PTSHLFQRFR ELGYACIKVM TFIQDNILIS TKY

Best Arabidopsis Sequence Match ( AT3G50590.2 )
(BLAST)

0001: MEWATVQHLD LRHVGRGVSK PLQPHTAAFH PSQAVIAVAV GSHIMEFDAL TGCKIASIDI GSPAVRMLYS PTSSNAVVAI LEDCTIRSCD FETEQTCVLH
0101: SPEKRSEHIS SDTEVHLAVT PLQPVVFFGF PKRMSVTVVG TVEGGRAPTK IKTDLKKPIV NIACHPRLPV LYVAYAEGLI RAYNIHTYAV HYTLQLDNTI
0201: KLIGASSFAF HPTLEWIFVG DRRGTLLAWD VSTERPNMIG ITQVGSQPIT SISWLPMLRV LVTVSKDGSL QVWKTRVIIN PNRPSTQTNF FEPAAMESID
0301: IPKILSQQGG EAVYPLPRIK TLEVHPKLNL AALIFANMVG NENTQNRAAQ TREGRKQLFA VLQSARGSSA SVLKEKLSSM GSSGILAEHQ LQALLQEHKG
0401: QSQLTISDIA RKAFLYSHFM EGHAKTAPIS RLPLITVVDT KDQLKDIPVC QPFHLELNFF NKPNRVLHYP VRSFYIEGLN LMAHNLCSGT DNIYKKLYTS
0501: IPGNVEYHSK HIVYSRKRHL FLVVFEFSGA TNEVVLYWEN TGSQLPNSKG STAKGCDAAF IGPNDDQFAI LDEDKTGLSM YILPKLTTME ENEKNLLSEE
0601: NQKKEADPSG IQGPQQFMFE TEVDRVFSTP IESTLMFACN GTQIGLAKLF QGYRLSASDG HYISTQGEGR KSIKLKKHEI ALQVQWQETP RGYVAGILTT
0701: QRVLMVSADF DILASSSTKY DRGLPSFRSL LWVGPALLFS TTTAVCLLGW DGKVRTILSI STPYAALVGA LNDRLLLAHP TDISPKQKKG IEIKSCLVGL
0801: LEPLLIGFST MQQTFEQKVD LSEILYQITT RFDSLRITPR SLDILARSAP VCGDLAVSLA QAGPQFNQVL RCAYAIKALR FSTALSVLKD EFLRSRDYPK
0901: CPPTSLLFQR FRQLGYACIK YGQFDSAKET FEVIGDYESM LDLFICHLNP SAMRRLAQKL EEESGDPELR RYCERILRVR STGWTQGIFA NFAAESMVPK
1001: GPEWGGGNWE IKTPTDMKSI PKWELAGEVM PYMKNEDGTI PSIVADHIGV YLGCVKGRVN VVEIKEDSLV SKPGGLSLLG KPVSDKPLAL PAGESSSMMG
1101: LESLGKQNVA DEQAKAAEEF KKTMYGATGD GSSSDEEGVT KPKKLQIRIR EKPTSTTVDV NKLKEAAKTF KLGDGLGLTM SRTKSINAGS QDLGQMLSQP
1201: SSSTVATTTA PSSASAPVDP FAMSSWTQQP QPVSQPAPPG VAAPIPEDFF QNTIPSVEVA KTLPPPGTYL SKMDQAARAA IAAQGGPNQA NNTPLPDIGL
1301: PDGGVPQQYP QQTSQQPGAP FQTVGLPDGG VRQQYPGQNQ VPSQVPVSTQ PLDLSVLGVP NTGDSGKPPG QPQSPPASVR PGQVPRGAAA PVCFKTGLAH
1401: LEQNQLPDAL SCFDEAFLAL AKDQSRGADI KAQATICAQY KIAVTLLREI LRLQRVQGAS ALSAKDEMAR LSRHLASLPL LAKHRINCIR TAIKRNMEVQ
1501: NYGYSKQMLE LLLSKAPASK QEELRGLVDL CVQRGTSNKS IDPLEDPSQL CSATLSRLST IGYDVCDLCG AKFAALSSPG CIICGMGSIK RSDALAGPAP
1601: VSTPFG

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J0P2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.