Factsheet for Os01t0653800-02

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
nucleus: 19621931
plasma membrane: 28056797

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0793100-01
Os03t0130500-01
Os04t0608500-01
Os06t0728600-00
Os08t0224700-01
Os08t0243900-01
Os09t0407950-01
Os09t0408000-01
Os11t0175900-01
Os11t0217300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24710.1	Os04t0608500-01	AT1G04810.1	24529374
AT5G24710.1	Os08t0224700-01	AT1G04810.1	24529374
AT5G24710.1	Os03t0130500-01	AT1G20760.1	24529374
AT5G24710.1	Os06t0728600-00	AT1G20760.1	24529374
AT5G24710.1	Os11t0217300-01	AT2G05830.1	24529374
AT5G24710.1	Os02t0793100-01	AT3G01780.1	24529374
AT5G24710.1	Os11t0175900-01	AT3G01780.1	24529374
AT5G24710.1	Os09t0407950-01	AT3G50590.1	24529374
AT5G24710.1	Os09t0408000-01	AT3G50590.1	24529374
AT5G24710.1	Os08t0243900-01	AT5G57460.1	24529374

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G263200.1	Wheat	golgi, unclear	89.47	90.59
TraesCS3A01G236500.2	Wheat	mitochondrion	88.96	90.34
KXG33009	Sorghum	mitochondrion	90.34	90.14
TraesCS3D01G237000.1	Wheat	mitochondrion	88.6	87.46
Zm00001d044026_P011	Maize	mitochondrion	89.25	84.47
HORVU3Hr1G058910.1	Barley	plastid	88.82	83.71
Zm00001d011483_P004	Maize	mitochondrion	88.16	80.99
GSMUA_Achr1P28020_001	Banana	mitochondrion	73.28	80.59
KRG96637	Soybean	endoplasmic reticulum	64.78	78.94
GSMUA_Achr6P21400_001	Banana	mitochondrion	75.53	78.67
CDY19826	Canola	mitochondrion	66.96	74.41
KRG89827	Soybean	cytosol	18.52	74.13
KRG99486	Soybean	endoplasmic reticulum	16.56	73.31
KRH68370	Soybean	endoplasmic reticulum	70.95	72.26
AT5G24710.1	Thale cress	mitochondrion	70.01	70.01
CDX87116	Canola	mitochondrion	68.77	68.87
PGSC0003DMT400046936	Potato	mitochondrion	70.52	68.82
Solyc01g102510.2.1	Tomato	nucleus	70.3	67.5
Os05t0297001-01	Rice	extracellular	3.34	65.71
Os01t0653350-00	Rice	mitochondrion	6.32	37.99

Protein Annotations

Gene3D:2.130.10.10	MapMan:22.1.4.4	EntrezGene:4324171	ProteinID:BAD68693.1	ProteinID:BAF05658.1	ProteinID:BAS73475.1
ProteinID:BAS73477.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	EnsemblPlantsGene:Os01g0653800	EnsemblPlants:Os01t0653800-02	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR45521	UniProt:Q5VPC8	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0000457F4F
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_015611827.1
SEG:seg	:	:	:	:	:

Description

Similar to predicted protein. (Os01t0653800-01);WD40 repeat-like domain containing protein. (Os01t0653800-02);Similar to Peptidase S8 and S53, subtilisin, kexin, sedolisin; WD40-like. (Os01t0653800-03)

Coordinates

chr1:-:26453784..26465951

Molecular Weight (calculated)

147069.0 Da

IEP (calculated)

7.129

GRAVY (calculated)

-0.126

Length

1377 amino acids

Sequence
(BLAST)

0001: MLRLRAFRPT SDKVVKIQLH PTHPWLVTAD ANDRVSVWDW EHRQVIYELK AGGVDERRLV GVKLEKLAEG DTDSKGKPTE AIRGGSVKQV SFYDDDVRFW
0101: QHWRNCSAAA EAPTAVNQQS SAFSAPAPST RGRHFVVICC ENKVIFLDLV TMRGRDVPKQ ELDNKSLLCM EFLSRSSSSD APLVAFGSSD GVIRVLSMLT
0201: WKLVRRYTGG HKGAISCLMT FMSAAGEVHL VSGGSDGLLI LWSADHIHDS RELVPKISLK AHDGGVVAVE LSRVMGSAPQ LITIGADKTL AIWDTVTFKE
0301: IRRIKPVPKL ACHSVASWCH PRAPNLDILT CVKDSHIWAI EHPTYSALTR PLCELSSLVP PQVLTQHKKL RVYCMVAHPL QPHLVATGTN IGIILSEFDP
0401: RALPAVAPLP TPAESKEHSA VYIVERELKL LNFQLSNTAN PSLGNAGVTS ETGRSRNDPL EQLVVKQTKK HISTPAPHDS YSILSVSSSG KYVAVIWPDI
0501: PSFAVYKASD WSVVDSGTGK LFAWDTCRDR YALVESALPP RMPLIVKGGS SKKAKEAAAV AAQAAAAAAS AASAATVQVR ILLDDGTAHV LQRSIDGRSE
0601: PVIGLHGGAL LGVTYRTSRR ISPVTATAIS TVQSMPLSGF GGSGSSFASD DPFSSKEGPP QNFQLYSWET YQPVSGLLAQ PEWTVWDQTV EYCAFAYQQY
0701: IVISSLRPQF RYLGDVSIPF ATGAVWHRRQ LFVATPTTIE CVFVDAGVAA IDIETKKRKE EMKAREAQSR AAAEHGDLAL ITVEGPKTTT SEKIALRPPM
0801: LQVVRLASFQ YAPSIPPFIV PKQSKLDGED SVFQKELDDR RYAEVAVAGG GVSVAVTRFP PEQKRPIGPL VVVGVRDGVL WLVDRYMCAH ALSLSHPGIR
0901: CRCLAAYGDP VSAVKWATRL GREHHDDLAQ FMLGMGYATE ALHLPGISKR LEFDLAMQSN DLKRALACLL TMSNSRDVGQ ETTATDVTQI LNLAVAKQAK
1001: QESLADAVQG IVKFVKEFFD LIDAADATGQ ADIAREVLKR LAAAASVKGA LHGQMLRGLA LRLANHGELT RLSGLVTNLI IAGHGREAAF AAAVLGDNAL
1101: MEKAWQDTGM LAEAVLHSQA HGRPSLRNLV IAWNKMLQKE LDHTPTVKTD AAAAFLASLE DPKLTSLGET EKKPPIEILP PGMPPLSAPP IVIKKSGAKP
1201: GLPNAAQAPT AAIGAPMAQD TPMVQGTPMV QGTPMAEGTT GAQAAPTAQG APAQTQNPEE AKPSESTAAP DNAEKTATPD NAERMAAPGN VEATTEPAAA
1301: PGNVEGTAAA ATDATSNADA TSGAPAPAAD SNGADPPAVT PGQVTNGAPS TETPETADKP SSTEPSPAPP IPNVPAV

Best Arabidopsis Sequence Match ( AT5G24710.1 )
(BLAST)

0001: MLRARAFRQT NGKIVKIQVH PTHPWLVTAD DSDHVSVWNW EHRQVIYELK AGGVDERRLV GAKLEKLAEG ESDYKAKPTE AIRGGSVKQV KFYDDDVRYW
0101: QLWRNRSAAA ESPSAVNHLT SAFTSPAPST KGRHFLVICC ENKAIFLDLV TMRGRDVPKQ ELDNKSLLCM EFLSRSSGGD GPLVAFGSTD GVIRVLSMIT
0201: WKLARRYTGG HKGSIYCLMN FMASSGEALL VSGGSDGLLV LWSADHGADS RELVPKLSLK AHDGGVVAVE LSRVSGSAPQ LITIGADKTL AIWDTMTFKE
0301: LRRIKPVPKL ACHSVASWCH PRAPNLDILT CVKDSHIWSI EHPTYSALTR PLCELSSLVP PQVLATHRKL RVYCMVAHPL QPHLVATGTN VGIIVSEFDP
0401: RAIPSAAPLP ALPGSRENSA IYILGRELKL LNFQLSNTAN PSLGNNSALS ESGLSKGDPG EQLTVKQTKK QIVAPVPHDS YSVLSVSSSG KYVAVVWPDI
0501: LYFSIYKVSD WSIVDSGSAR LLAWDTCRDR FAILESVLPH RMPIIPKGGS SRKAKEAAAA AAQAAAAASA ASSASVQVRI LLDDGTSNIL MRSVGGRSEP
0601: VIGLHGGALL GIGYRTSRRI SPVAATAIST IQSMPLSGFG NSNVSSFSSY DDGFSSQKSA ESAPLNYQLY SWENFEPVGG MLPQPEWTAW DQTVEYCAFA
0701: YQQYMVISSL RPQYRYLGDV AIAHATGAVW HRRQLFVATP TTIECVFVDA GVSEIDIETR KMKEEMKLKE AQARAVAEHG ELALITVEGS QAAKQERISL
0801: RPPMLQVVRL ASFQNAPSVP PFLSLPRQSR GDSDDIMDER RVNEVAVGGG GVSVAVTRFP VEQKRPVGPL VVAGVRDGVL WLIDRYMCAH AISLNHPGIR
0901: CRCLAAYGDA VSAVKWASRL GREHHDDLAQ FMLGMGYATE ALHLPGISKR LEFDLAMQSN DLKRALHCLL TMSNSKDIGQ DGVGLDLSDI LSLTATKKED
1001: VVEAVEGIVK FAKEFLDLID AADATGHADI AREALKRLAT AGSVKGALQG HELRGLSLRL ANHGELTRLS GLVNNLISIG LGRESAFSAA VLGDNALMEK
1101: AWQDTGMLAE AVLHAHAHGR PTLKNLVQAW NKTLQKEVEK APSSKTDAAS AFLASLEDPK LTSLSDASRK PPIEILPPGM SSIFASITAP KKPLLTQKTA
1201: QPEVAKPLAL EEPTKPLAIE APPSSEAPQT ESAPETAAAA ESPAPETAAV AESPAPGTAA VAEAPASETA AAPVDGPVTE TVSEPPPVEK EETSLEEKSD
1301: PSSTPNTETA TSTENTSQTT TTPESVTTAP PEPITTAPPE TVTTTAVKPT ENAATERRVT NYPPIRSQPI DFDFLNG

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KIH8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.