Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- vacuole 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRG99486 | Soybean | endoplasmic reticulum | 85.47 | 94.53 |
Os05t0297001-01 | Rice | extracellular | 8.72 | 42.86 |
KRG96637 | Soybean | endoplasmic reticulum | 95.35 | 29.03 |
KRH68370 | Soybean | endoplasmic reticulum | 94.19 | 23.96 |
CDY19826 | Canola | mitochondrion | 72.38 | 20.1 |
GSMUA_Achr1P28020_001 | Banana | mitochondrion | 71.22 | 19.57 |
GSMUA_Achr6P21400_001 | Banana | mitochondrion | 74.71 | 19.44 |
AT5G24710.1 | Thale cress | mitochondrion | 76.16 | 19.03 |
PGSC0003DMT400046936 | Potato | mitochondrion | 76.74 | 18.71 |
Os01t0653800-02 | Rice | plasma membrane | 74.13 | 18.52 |
Solyc01g102510.2.1 | Tomato | nucleus | 76.45 | 18.34 |
TraesCS3A01G236500.2 | Wheat | mitochondrion | 72.09 | 18.29 |
CDX87116 | Canola | mitochondrion | 72.97 | 18.25 |
TraesCS3B01G263200.1 | Wheat | golgi, unclear | 72.09 | 18.24 |
KXG33009 | Sorghum | mitochondrion | 72.67 | 18.12 |
TraesCS3D01G237000.1 | Wheat | mitochondrion | 72.09 | 17.78 |
Zm00001d044026_P011 | Maize | mitochondrion | 72.38 | 17.11 |
Zm00001d011483_P004 | Maize | mitochondrion | 72.38 | 16.61 |
VIT_08s0056g00040.t01 | Wine grape | cytosol | 81.4 | 15.35 |
Os01t0653350-00 | Rice | mitochondrion | 2.91 | 4.37 |
HORVU1Hr1G042290.1 | Barley | mitochondrion | 0.0 | 0.0 |
Bra028077.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, plastid | 0.0 | 0.0 |
Protein Annotations
EntrezGene:100811133 | Gene3D:2.130.10.10 | MapMan:35.2 | UniProt:A0A0R0EIF0 | EMBL:ACUP02012281 | EnsemblPlantsGene:GLYMA_20G050100 |
GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
EnsemblPlants:KRG89827 | ProteinID:KRG89827 | ProteinID:KRG89827.1 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 |
SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0006ED9D59 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS |
InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr20:+:10155128..10157820
Molecular Weight (calculated)
36732.3 Da
IEP (calculated)
8.604
GRAVY (calculated)
0.171
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFLYRTGGD GPLVAFGASD GVIRVLSMMT WKLVRRYTGG HKGSISCLMS FMAASGEALL VSGASDGLLI IWSADHGQDS RELVPKLSLK AHDGGVVAVE
101: LSKVMGGAPQ LITIGADKTL AIWDTVSFKV YCMVAHTLQP HLVAVGTNIG VIICEFDARS LPPVAPLPTP SDSKEHSAIF VIERELKLLN FRLNNSANPS
201: LGNNSSLSET GRPKGDFFEP LPIKQGKKHI STPVPHDSHS VLSVSSSGKY LAIVWPDIPY FSVYKVSDWS IVDSGSARLL AWDTCRDRFA ILELALPPRI
301: PIVPKGSSSK RAKEAVAAQV AAAATAAAST TSYTFFGFVT SGLF
101: LSKVMGGAPQ LITIGADKTL AIWDTVSFKV YCMVAHTLQP HLVAVGTNIG VIICEFDARS LPPVAPLPTP SDSKEHSAIF VIERELKLLN FRLNNSANPS
201: LGNNSSLSET GRPKGDFFEP LPIKQGKKHI STPVPHDSHS VLSVSSSGKY LAIVWPDIPY FSVYKVSDWS IVDSGSARLL AWDTCRDRFA ILELALPPRI
301: PIVPKGSSSK RAKEAVAAQV AAAATAAAST TSYTFFGFVT SGLF
0001: MLRARAFRQT NGKIVKIQVH PTHPWLVTAD DSDHVSVWNW EHRQVIYELK AGGVDERRLV GAKLEKLAEG ESDYKAKPTE AIRGGSVKQV KFYDDDVRYW
0101: QLWRNRSAAA ESPSAVNHLT SAFTSPAPST KGRHFLVICC ENKAIFLDLV TMRGRDVPKQ ELDNKSLLCM EFLSRSSGGD GPLVAFGSTD GVIRVLSMIT
0201: WKLARRYTGG HKGSIYCLMN FMASSGEALL VSGGSDGLLV LWSADHGADS RELVPKLSLK AHDGGVVAVE LSRVSGSAPQ LITIGADKTL AIWDTMTFKE
0301: LRRIKPVPKL ACHSVASWCH PRAPNLDILT CVKDSHIWSI EHPTYSALTR PLCELSSLVP PQVLATHRKL RVYCMVAHPL QPHLVATGTN VGIIVSEFDP
0401: RAIPSAAPLP ALPGSRENSA IYILGRELKL LNFQLSNTAN PSLGNNSALS ESGLSKGDPG EQLTVKQTKK QIVAPVPHDS YSVLSVSSSG KYVAVVWPDI
0501: LYFSIYKVSD WSIVDSGSAR LLAWDTCRDR FAILESVLPH RMPIIPKGGS SRKAKEAAAA AAQAAAAASA ASSASVQVRI LLDDGTSNIL MRSVGGRSEP
0601: VIGLHGGALL GIGYRTSRRI SPVAATAIST IQSMPLSGFG NSNVSSFSSY DDGFSSQKSA ESAPLNYQLY SWENFEPVGG MLPQPEWTAW DQTVEYCAFA
0701: YQQYMVISSL RPQYRYLGDV AIAHATGAVW HRRQLFVATP TTIECVFVDA GVSEIDIETR KMKEEMKLKE AQARAVAEHG ELALITVEGS QAAKQERISL
0801: RPPMLQVVRL ASFQNAPSVP PFLSLPRQSR GDSDDIMDER RVNEVAVGGG GVSVAVTRFP VEQKRPVGPL VVAGVRDGVL WLIDRYMCAH AISLNHPGIR
0901: CRCLAAYGDA VSAVKWASRL GREHHDDLAQ FMLGMGYATE ALHLPGISKR LEFDLAMQSN DLKRALHCLL TMSNSKDIGQ DGVGLDLSDI LSLTATKKED
1001: VVEAVEGIVK FAKEFLDLID AADATGHADI AREALKRLAT AGSVKGALQG HELRGLSLRL ANHGELTRLS GLVNNLISIG LGRESAFSAA VLGDNALMEK
1101: AWQDTGMLAE AVLHAHAHGR PTLKNLVQAW NKTLQKEVEK APSSKTDAAS AFLASLEDPK LTSLSDASRK PPIEILPPGM SSIFASITAP KKPLLTQKTA
1201: QPEVAKPLAL EEPTKPLAIE APPSSEAPQT ESAPETAAAA ESPAPETAAV AESPAPGTAA VAEAPASETA AAPVDGPVTE TVSEPPPVEK EETSLEEKSD
1301: PSSTPNTETA TSTENTSQTT TTPESVTTAP PEPITTAPPE TVTTTAVKPT ENAATERRVT NYPPIRSQPI DFDFLNG
0101: QLWRNRSAAA ESPSAVNHLT SAFTSPAPST KGRHFLVICC ENKAIFLDLV TMRGRDVPKQ ELDNKSLLCM EFLSRSSGGD GPLVAFGSTD GVIRVLSMIT
0201: WKLARRYTGG HKGSIYCLMN FMASSGEALL VSGGSDGLLV LWSADHGADS RELVPKLSLK AHDGGVVAVE LSRVSGSAPQ LITIGADKTL AIWDTMTFKE
0301: LRRIKPVPKL ACHSVASWCH PRAPNLDILT CVKDSHIWSI EHPTYSALTR PLCELSSLVP PQVLATHRKL RVYCMVAHPL QPHLVATGTN VGIIVSEFDP
0401: RAIPSAAPLP ALPGSRENSA IYILGRELKL LNFQLSNTAN PSLGNNSALS ESGLSKGDPG EQLTVKQTKK QIVAPVPHDS YSVLSVSSSG KYVAVVWPDI
0501: LYFSIYKVSD WSIVDSGSAR LLAWDTCRDR FAILESVLPH RMPIIPKGGS SRKAKEAAAA AAQAAAAASA ASSASVQVRI LLDDGTSNIL MRSVGGRSEP
0601: VIGLHGGALL GIGYRTSRRI SPVAATAIST IQSMPLSGFG NSNVSSFSSY DDGFSSQKSA ESAPLNYQLY SWENFEPVGG MLPQPEWTAW DQTVEYCAFA
0701: YQQYMVISSL RPQYRYLGDV AIAHATGAVW HRRQLFVATP TTIECVFVDA GVSEIDIETR KMKEEMKLKE AQARAVAEHG ELALITVEGS QAAKQERISL
0801: RPPMLQVVRL ASFQNAPSVP PFLSLPRQSR GDSDDIMDER RVNEVAVGGG GVSVAVTRFP VEQKRPVGPL VVAGVRDGVL WLIDRYMCAH AISLNHPGIR
0901: CRCLAAYGDA VSAVKWASRL GREHHDDLAQ FMLGMGYATE ALHLPGISKR LEFDLAMQSN DLKRALHCLL TMSNSKDIGQ DGVGLDLSDI LSLTATKKED
1001: VVEAVEGIVK FAKEFLDLID AADATGHADI AREALKRLAT AGSVKGALQG HELRGLSLRL ANHGELTRLS GLVNNLISIG LGRESAFSAA VLGDNALMEK
1101: AWQDTGMLAE AVLHAHAHGR PTLKNLVQAW NKTLQKEVEK APSSKTDAAS AFLASLEDPK LTSLSDASRK PPIEILPPGM SSIFASITAP KKPLLTQKTA
1201: QPEVAKPLAL EEPTKPLAIE APPSSEAPQT ESAPETAAAA ESPAPETAAV AESPAPGTAA VAEAPASETA AAPVDGPVTE TVSEPPPVEK EETSLEEKSD
1301: PSSTPNTETA TSTENTSQTT TTPESVTTAP PEPITTAPPE TVTTTAVKPT ENAATERRVT NYPPIRSQPI DFDFLNG
Arabidopsis Description
Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KIH8]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.