Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| endoplasmic reticulum:
27224218
endoplasmic reticulum: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH02873 | Soybean | endoplasmic reticulum, nucleus | 96.19 | 96.19 |
| VIT_11s0052g00920.t01 | Wine grape | mitochondrion | 72.7 | 73.75 |
| CDX88623 | Canola | plastid | 72.22 | 70.98 |
| Bra002727.1-P | Field mustard | plastid | 71.9 | 70.78 |
| Bra006819.1-P | Field mustard | plastid | 72.22 | 70.76 |
| CDY11868 | Canola | plastid | 72.22 | 70.76 |
| AT5G57460.1 | Thale cress | cytosol | 72.06 | 70.28 |
| CDY38299 | Canola | plastid | 71.27 | 69.83 |
| Solyc10g078790.1.1 | Tomato | nucleus | 70.32 | 69.76 |
| PGSC0003DMT400029685 | Potato | cytosol, plastid | 70.16 | 69.61 |
| CDY25907 | Canola | plastid | 70.95 | 69.3 |
| GSMUA_Achr3P27960_001 | Banana | plastid | 63.81 | 61.37 |
| EES14778 | Sorghum | plastid | 58.25 | 57.61 |
| Os08t0243900-01 | Rice | plasma membrane, plastid | 58.57 | 57.57 |
| HORVU2Hr1G002480.5 | Barley | cytosol | 38.57 | 56.91 |
| TraesCS2B01G003600.1 | Wheat | plastid | 56.67 | 56.58 |
| Zm00001d024416_P001 | Maize | plasma membrane | 56.98 | 56.36 |
| TraesCS2A01G014200.1 | Wheat | plastid | 56.67 | 56.22 |
| TraesCS2D01G014900.1 | Wheat | plastid | 56.83 | 56.2 |
| HORVU2Hr1G002410.2 | Barley | plastid | 57.14 | 52.25 |
Protein Annotations
| EMBL:ACUP02012601 | EnsemblPlants:KRG90331 | EnsemblPlantsGene:GLYMA_20G083600 | EntrezGene:100777258 | InterPro:IPR028565 | InterPro:MHD |
| InterPro:Muniscin_C | PANTHER:PTHR37769 | PFAM:PF10291 | PFscan:PS51072 | ProteinID:KRG90331 | ProteinID:KRG90331.1 |
| SEG:seg | UniParc:UPI000233D9FE | UniProt:K7N2B4 | MapMan:22.1.4.2 | : | : |
Description
hypothetical protein
Coordinates
chr20:+:31453743..31457466
Molecular Weight (calculated)
68244.1 Da
IEP (calculated)
4.674
GRAVY (calculated)
-0.198
Length
630 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCLALSLQP ANGPDILLQT REWFPPSRAL GALSAFRQTR RAFAANKHSA PDDAYAAESI GDDPLAASSG QVIVGVESRY RVVYRLVNGI YVLGITVADH
101: DNSVNVFECI HIVNQAVSVV VTACRGVDVT PEKLSRKYAE IYMALDIVLR GVSNIRLAAM LATMHGENIA KMVHSAIDTE NKIRGAETWA SAEVHSLEHQ
201: AGIDAFTTAT FELPPETLEA GDEVAASLAP AAPEPQEELQ QKQEEPQVEK DPFAASDAIN KPQELVEGFK KTKDPSGTDL TSALEGLDVT TLPPPEATQS
301: TQINVEGFEG NYGGVEFGHE QASIGEAFEG FNDAWGGGLD PSEFVGPTKP NKPLGLGGVE LLQTGPDAAP KAAGESGAGT PLENLLVKKT DMRGPEMYIS
401: EEISAEFRES LLARVGLMGV VYLRTLPPKT TGDKETEFSF QIEGTEAVKR FVIQSSRVSS LGNGLFHVRT AASEEPIPIM KYSLVPRLTP LPLRVRLTKR
501: HTGSLLSVMI QYASNPDLLV PLHDVTFTLK LPVDPTLLKV SPKAVLNRTE REIKWLVPEI PLKGSPGRLR VRMPVDSNED DEEIEVVGYV KFSEQVTQSL
601: SGVSIRPASD SKTDFYEVSH TLESGVYMCN
101: DNSVNVFECI HIVNQAVSVV VTACRGVDVT PEKLSRKYAE IYMALDIVLR GVSNIRLAAM LATMHGENIA KMVHSAIDTE NKIRGAETWA SAEVHSLEHQ
201: AGIDAFTTAT FELPPETLEA GDEVAASLAP AAPEPQEELQ QKQEEPQVEK DPFAASDAIN KPQELVEGFK KTKDPSGTDL TSALEGLDVT TLPPPEATQS
301: TQINVEGFEG NYGGVEFGHE QASIGEAFEG FNDAWGGGLD PSEFVGPTKP NKPLGLGGVE LLQTGPDAAP KAAGESGAGT PLENLLVKKT DMRGPEMYIS
401: EEISAEFRES LLARVGLMGV VYLRTLPPKT TGDKETEFSF QIEGTEAVKR FVIQSSRVSS LGNGLFHVRT AASEEPIPIM KYSLVPRLTP LPLRVRLTKR
501: HTGSLLSVMI QYASNPDLLV PLHDVTFTLK LPVDPTLLKV SPKAVLNRTE REIKWLVPEI PLKGSPGRLR VRMPVDSNED DEEIEVVGYV KFSEQVTQSL
601: SGVSIRPASD SKTDFYEVSH TLESGVYMCN
001: MSCLALALQP ANGSDILLQT REWFPPARAL IALSYFRQMR QALASSKQQH QQQSNQKQNQ ASSSSSSSSS VADPDDATAA EFVGDDPLAA SNGQVIVGVE
101: SKYRVVYRLV NSIYILGVTV ADHDNSINVF ECIHIVNQAV SVIVTACRGV EVTPEKLGRK YAEVYMALDI VLRGVSNIRL AAMLGAMHGD GIAKMVHSAL
201: DTENKIRGAD SWMAVESHAA EHQASVNAFS NARFELPPET VAAGDEFAAS LAPVVPESEQ LKEEPEPENK DPFAASETIN KEKELVGGFK KTKDPSSTDL
301: TLALAGLEVT TLPPAEATQS THINVEGFEG QYGGIEFSNE QATIGETFES FSDAWGGGLD PSEFMGPKKI QKKEGLGGLE LLHTSDPKAV EGKDGVNIDN
401: LVKKPEMKGP EMYISEEIRT EFRESLLARV GVMGVIYLKT MPPKGSGEEK ETEFSFRVEG TTAVKRFAMQ SSRISSLGNG LFHVRTAPSE EPIPILKYSL
501: QPKLTPLPLR VRMVKRISGT LLSLMIQYVS NPDLPQPLKN VDFILKLPVD PTLLKVSPKA ILNRTDRELK WQIPEIPLNG SPGRLRARMP IDSDNSEEEP
601: DIICYVKFSV QGNTSLSGIS LRAAAEGNTD FFEVDHRYET GVYMCN
101: SKYRVVYRLV NSIYILGVTV ADHDNSINVF ECIHIVNQAV SVIVTACRGV EVTPEKLGRK YAEVYMALDI VLRGVSNIRL AAMLGAMHGD GIAKMVHSAL
201: DTENKIRGAD SWMAVESHAA EHQASVNAFS NARFELPPET VAAGDEFAAS LAPVVPESEQ LKEEPEPENK DPFAASETIN KEKELVGGFK KTKDPSSTDL
301: TLALAGLEVT TLPPAEATQS THINVEGFEG QYGGIEFSNE QATIGETFES FSDAWGGGLD PSEFMGPKKI QKKEGLGGLE LLHTSDPKAV EGKDGVNIDN
401: LVKKPEMKGP EMYISEEIRT EFRESLLARV GVMGVIYLKT MPPKGSGEEK ETEFSFRVEG TTAVKRFAMQ SSRISSLGNG LFHVRTAPSE EPIPILKYSL
501: QPKLTPLPLR VRMVKRISGT LLSLMIQYVS NPDLPQPLKN VDFILKLPVD PTLLKVSPKA ILNRTDRELK WQIPEIPLNG SPGRLRARMP IDSDNSEEEP
601: DIICYVKFSV QGNTSLSGIS LRAAAEGNTD FFEVDHRYET GVYMCN
Arabidopsis Description
At5g57460 [Source:UniProtKB/TrEMBL;Acc:Q9FKM4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.