CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21317	Soybean	nucleus, plastid	97.86	97.86
KRH50153	Soybean	plastid	86.46	87.92
KRH20341	Soybean	plastid	84.32	84.32
VIT_10s0003g00890.t01	Wine grape	plastid	84.32	83.33
Bra013314.1-P	Field mustard	plastid	82.42	82.03
CDX78860	Canola	plastid	82.19	81.8
CDX99465	Canola	plastid	82.19	81.8
AT5G45930.1	Thale cress	plastid	81.0	81.58
Bra012595.1-P	Field mustard	plastid	81.71	81.32
CDY55641	Canola	plastid	81.47	81.09
PGSC0003DMT400068480	Potato	plastid	81.95	80.8
AT4G18480.1	Thale cress	plastid	81.0	80.42
Solyc10g008740.2.1	Tomato	plastid	81.47	80.33
CDY01542	Canola	plastid	81.47	80.33
Os03t0563300-01	Rice	plastid	76.48	77.59
TraesCS7B01G382800.3	Wheat	plastid	76.48	76.67
CDY50485	Canola	plastid	61.52	76.63
TraesCS7D01G467500.1	Wheat	plastid	76.25	76.43
CDX87756	Canola	plastid	61.28	76.33
EES16721	Sorghum	plastid	76.25	76.07
TraesCS7A01G480700.1	Wheat	plastid	76.01	76.01
Bra022000.1-P	Field mustard	plastid	60.81	75.74
GSMUA_Achr11P...	Banana	plastid	64.85	74.39
Zm00001d023536_P002	Maize	plastid	77.43	71.02
GSMUA_Achr6P21670_001	Banana	plastid	52.73	57.66
KRH77667	Soybean	nucleus, plastid	31.59	17.73
KRH27819	Soybean	plastid	30.64	17.2

Protein Annotations

KEGG:00860+6.6.1.1	Gene3D:1.10.8.80	EntrezGene:100815274	Gene3D:3.40.50.300	MapMan:7.12.6.1.3	InterPro:AAA+_ATPase
EMBL:ACUP02009170	ncoils:Coil	EnsemblPlantsGene:GLYMA_15G080200	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0015979	GO:GO:0015995	GO:GO:0016851	GO:GO:0016874	UniProt:I1MEQ1	EnsemblPlants:KRH10981
ProteinID:KRH10981	ProteinID:KRH10981.1	InterPro:Mg_chelatase_ATPase-isu	InterPro:Mg_chelatse_chII_dom	InterPro:P-loop_NTPase	PFAM:PF01078
PANTHER:PTHR32039	PANTHER:PTHR32039:SF9	MetaCyc:PWY-5531	MetaCyc:PWY-7159	SMART:SM00382	SUPFAM:SSF52540
TIGRFAMs:TIGR02030	UniParc:UPI000233AE8A	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:6155823..6158347

Molecular Weight (calculated)

45915.1 Da

IEP (calculated)

5.388

GRAVY (calculated)

-0.168

Length

421 amino acids

Sequence
(BLAST)

001: MASTLGTSSI AVLPSRCISS FSSKPSIHTL SLTSGQSYGR KFYGGIGIHG IKGRSQLSVA NVATEVNSVE QAQSIASKES QRPVYPFSAI VGQDEMKLCL
101: LLNVIDPKIG GVMIMGDRGT GKSTTVRSLV DLLPEIKVVA GDPYNSDPQD PEFMGVEVRE RVLQGEELSV VLTKINMVDL PLGATEDRVC GTIDIEKALT
201: EGVKAFEPGL LAKANRGILY VDEVNLLDDH LVDVLLDSAA SGWNTVEREG ISISHPARFI LIGSGNPEEG ELRPQLLDRF GMHAQVGTVR DAELRVKIVE
301: ERGRFDKNPK EFRDSYKAEQ EKLQQQITSA RSVLSSVQID QDLKVKISKV CAELNVDGLR GDIVTNRAAK ALAALKERDK VSAEDIATVI PNCLRHRLRK
401: DPLESIDSGL LVTEKFYEVF S

Best Arabidopsis Sequence Match ( AT4G18480.1 )
(BLAST)

001: MASLLGTSSS AIWASPSLSS PSSKPSSSPI CFRPGKLFGS KLNAGIQIRP KKNRSRYHVS VMNVATEINS TEQVVGKFDS KKSARPVYPF AAIVGQDEMK
101: LCLLLNVIDP KIGGVMIMGD RGTGKSTTVR SLVDLLPEIN VVAGDPYNSD PIDPEFMGVE VRERVEKGEQ VPVIATKINM VDLPLGATED RVCGTIDIEK
201: ALTEGVKAFE PGLLAKANRG ILYVDEVNLL DDHLVDVLLD SAASGWNTVE REGISISHPA RFILIGSGNP EEGELRPQLL DRFGMHAQVG TVRDADLRVK
301: IVEERARFDS NPKDFRDTYK TEQDKLQDQI STARANLSSV QIDRELKVKI SRVCSELNVD GLRGDIVTNR AAKALAALKG KDRVTPDDVA TVIPNCLRHR
401: LRKDPLESID SGVLVSEKFA EIFS

Arabidopsis Description

CHLI1Magnesium-chelatase subunit ChlI-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P16127]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.