Factsheet for Os03t0563300-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 17189339
extracellular: 26072143
plasma membrane: 27800704

msms PMID: 26072143 doi

B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G467500.1	Wheat	plastid	90.12	89.05
TraesCS7B01G382800.3	Wheat	plastid	89.88	88.81
TraesCS7A01G480700.1	Wheat	plastid	88.92	87.65
EES16721	Sorghum	plastid	87.71	86.26
Zm00001d023536_P002	Maize	plastid	87.47	79.08
VIT_10s0003g00890.t01	Wine grape	plastid	80.0	77.93
KRH50153	Soybean	plastid	77.59	77.78
KRH21317	Soybean	nucleus, plastid	78.07	76.96
KRH20341	Soybean	plastid	77.83	76.72
KRH10981	Soybean	nucleus, plastid	77.59	76.48
Solyc10g008740.2.1	Tomato	plastid	77.59	75.41
PGSC0003DMT400068480	Potato	plastid	77.59	75.41
Bra012595.1-P	Field mustard	plastid	76.14	74.7
CDY55641	Canola	plastid	76.14	74.7
CDX99465	Canola	plastid	75.9	74.47
AT5G45930.1	Thale cress	plastid	74.94	74.4
CDY01542	Canola	plastid	76.39	74.24
CDX78860	Canola	plastid	75.66	74.23
Bra013314.1-P	Field mustard	plastid	75.66	74.23
AT4G18480.1	Thale cress	plastid	75.42	73.82
GSMUA_Achr11P...	Banana	plastid	64.82	73.3
CDY50485	Canola	plastid	55.66	68.34
CDX87756	Canola	plastid	55.42	68.05
Bra022000.1-P	Field mustard	plastid	55.18	67.75
GSMUA_Achr6P21670_001	Banana	plastid	52.53	56.62
Os03t0811300-01	Rice	plasma membrane	8.19	21.12
Os03t0811100-01	Rice	plastid	32.53	17.9

Protein Annotations

KEGG:00860+6.6.1.1	Gene3D:1.10.8.80	Gene3D:3.40.50.300	EntrezGene:4333259	MapMan:7.12.6.1.3	InterPro:AAA+_ATPase
ProteinID:AAX95610.1	ProteinID:ABF97128.1	ProteinID:ABK58608.1	EMBL:AK070720	EMBL:AK104435	ProteinID:BAF12407.1
ProteinID:BAS84940.1	ncoils:Coil	ProteinID:EAZ27502.1	EMBL:EF065607	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0015979	GO:GO:0015995	GO:GO:0016851	GO:GO:0016874	InterPro:Mg_chelatase_ATPase-isu
InterPro:Mg_chelatse_chII_dom	EnsemblPlantsGene:Os03g0563300	EnsemblPlants:Os03t0563300-01	InterPro:P-loop_NTPase	PFAM:PF01078	PANTHER:PTHR32039
PANTHER:PTHR32039:SF9	UniProt:Q53RM0	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR02030	UniParc:UPI0000035C60
RefSeq:XP_015627981.1	SEG:seg	:	:	:	:

Description

Magnesium-chelatase subunit chlI, magnesium chelatase subunit ChlI, MgCh I subuintSimilar to Mg-chelatase subunit (Fragment). (Os03t0563300-01)

Coordinates

chr3:-:20248326..20250000

Molecular Weight (calculated)

44867.9 Da

IEP (calculated)

5.388

GRAVY (calculated)

-0.105

Length

415 amino acids

Sequence
(BLAST)

001: MASAFSPATA APAASPALFS ASTSRPLSLT AAAAAVSARI PSRRGFRRGR FTVCNVAAPS ATQQEAKAAG AKESQRPVYP FAAIVGQDEM KLCLLLNVID
101: PKIGGVMIMG DRGTGKSTTV RSLVDLLPDI RVVVGDPFNS DPDDPEVMGP EVRERVLEGE KLPVVTAKIT MVDLPLGATE DRVCGTIDIE KALTDGVKAF
201: EPGLLAKANR GILYVDEVNL LDDHLVDVLL DSAASGWNTV EREGISISHP ARFILIGSGN PEEGELRPQL LDRFGMHAQV GTVRDAELRV KIVEERARFD
301: RDPKAFRESY LEEQDKLQQQ ISSARSNLGA VQIDHDLRVK ISKVCAELNV DGLRGDIVTN RAAKALAALK GRDTVTVEDI ATVIPNCLRH RLRKDPLESI
401: DSGLLVVEKF YEVFT

Best Arabidopsis Sequence Match ( AT5G45930.1 )
(BLAST)

001: MASLLGRSPS SILTCPRISS PSSTSSMSHL CFGPEKLSGR IQFNPKKNRS RYHVSVMNVA TEINSVEQAK KIDSKESARP VYPFAAIVGQ DEMKLCLLLN
101: VIDPKIGGVM IMGDRGTGKS TTVRSLVDLL PEITVVSGDP YNSDPRDPEC MGKEVREKVQ KGEELSVIET KINMVDLPLG ATEDRVCGTI DIEKALTEGV
201: KAFEPGLLAK ANRGILYVDE VNLLDDHLVD VLLDSAASGW NTVEREGISI SHPARFILIG SGNPEEGELR PQLLDRFGMH AQVGTVRDAE LRVKIVEERA
301: RFDSNPKEFR ETYQEEQLKL QEQITTARSN LSAVQIDQDL KVKISKVCAE LDVDGLRGDM VINRAARALA ALQGRDQVTA EDVGIVIPNC LRHRLRKDPL
401: ESMDSGILVT EKFYEVFT

Arabidopsis Description

CHLI2Magnesium-chelatase subunit ChlI-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q5XF33]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.