CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50485	Canola	plastid	97.34	97.34
AT5G45930.1	Thale cress	plastid	84.62	68.42
CDX99465	Canola	plastid	78.99	63.12
CDX78860	Canola	plastid	78.11	62.41
CDY55641	Canola	plastid	78.11	62.41
CDY01542	Canola	plastid	78.4	62.06
KRH21317	Soybean	nucleus, plastid	76.92	61.76
KRH10981	Soybean	nucleus, plastid	76.33	61.28
KRH50153	Soybean	plastid	72.49	59.18
VIT_10s0003g00890.t01	Wine grape	plastid	74.56	59.15
Solyc10g008740.2.1	Tomato	plastid	72.49	57.38
KRH20341	Soybean	plastid	71.01	57.01
PGSC0003DMT400068480	Potato	plastid	71.89	56.91
Os03t0563300-01	Rice	plastid	68.05	55.42
EES16721	Sorghum	plastid	68.93	55.21
TraesCS7D01G467500.1	Wheat	plastid	68.05	54.76
TraesCS7B01G382800.3	Wheat	plastid	67.75	54.52
TraesCS7A01G480700.1	Wheat	plastid	67.75	54.39
Zm00001d023536_P002	Maize	plastid	67.75	49.89
GSMUA_Achr11P...	Banana	plastid	53.85	49.59
GSMUA_Achr6P21670_001	Banana	plastid	39.94	35.06
CDX95054	Canola	plastid	27.81	12.47
CDX93557	Canola	plastid	27.81	12.43

Protein Annotations

EnsemblPlants:CDX87756	EnsemblPlantsGene:GSBRNA2T00146826001	Gene3D:1.10.8.80	Gene3D:3.40.50.300	InterPro:P-loop_NTPase	ncoils:Coil
PANTHER:PTHR32039	PANTHER:PTHR32039:SF9	ProteinID:CDX87756	ProteinID:CDX87756.1	SEG:seg	SUPFAM:SSF52540
UniParc:UPI0004EE260A	MapMan:50.6.6	:	:	:	:

Description

BnaC02g31930D

Coordinates

chrLK031851:-:993691..995243

Molecular Weight (calculated)

37429.2 Da

IEP (calculated)

6.678

GRAVY (calculated)

-0.305

Length

338 amino acids

Sequence
(BLAST)

001: MVSLLGTSSS SILSCPRLSS TPLTSALCFR PGNTFGGKLY RRIQSETKKS RSRHHVLVTN VATGINSIEQ AKKIGTKESA RPVYPFAAIV GQDEMKLCLL
101: LNVIDPKIGG VMIMGDRGTG KSTTVRSLVD LLPEITVVAG DPYNSDPKDP EFMGKEVRER VQKGEELDVM ETKINMVDLP LGNPEEGELR PQLLDRFGMH
201: AQVSTVRDAE LRVKIVEERA CFDSNPKEFR ESYLEEQMKL QEQITSARSN LSGVEIDQDL KVKISRVCAE LDVDGLRGDI VTNRAARALA ALKGRDHVTA
301: EDVGIVIPNC LRHRLRKDPL ESMDSGIVVT EKFYEVFS

Best Arabidopsis Sequence Match ( AT4G18480.1 )
(BLAST)

001: MASLLGTSSS AIWASPSLSS PSSKPSSSPI CFRPGKLFGS KLNAGIQIRP KKNRSRYHVS VMNVATEINS TEQVVGKFDS KKSARPVYPF AAIVGQDEMK
101: LCLLLNVIDP KIGGVMIMGD RGTGKSTTVR SLVDLLPEIN VVAGDPYNSD PIDPEFMGVE VRERVEKGEQ VPVIATKINM VDLPLGATED RVCGTIDIEK
201: ALTEGVKAFE PGLLAKANRG ILYVDEVNLL DDHLVDVLLD SAASGWNTVE REGISISHPA RFILIGSGNP EEGELRPQLL DRFGMHAQVG TVRDADLRVK
301: IVEERARFDS NPKDFRDTYK TEQDKLQDQI STARANLSSV QIDRELKVKI SRVCSELNVD GLRGDIVTNR AAKALAALKG KDRVTPDDVA TVIPNCLRHR
401: LRKDPLESID SGVLVSEKFA EIFS

Arabidopsis Description

CHLI1Magnesium-chelatase subunit ChlI-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P16127]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.