CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0563300-01	Rice	plastid	86.26	87.71
TraesCS7A01G480700.1	Wheat	plastid	83.89	84.09
TraesCS7D01G467500.1	Wheat	plastid	83.18	83.57
TraesCS7B01G382800.3	Wheat	plastid	83.18	83.57
Zm00001d023536_P002	Maize	plastid	89.34	82.14
VIT_10s0003g00890.t01	Wine grape	plastid	77.96	77.23
KRH50153	Soybean	plastid	75.12	76.57
KRH21317	Soybean	nucleus, plastid	76.07	76.25
KRH10981	Soybean	nucleus, plastid	76.07	76.25
Solyc10g008740.2.1	Tomato	plastid	77.01	76.11
PGSC0003DMT400068480	Potato	plastid	77.01	76.11
KRH20341	Soybean	plastid	75.36	75.53
Bra012595.1-P	Field mustard	plastid	75.12	74.94
CDY55641	Canola	plastid	75.12	74.94
GSMUA_Achr11P...	Banana	plastid	65.17	74.93
AT5G45930.1	Thale cress	plastid	73.46	74.16
CDY01542	Canola	plastid	74.88	74.0
CDX99465	Canola	plastid	73.93	73.76
CDX78860	Canola	plastid	73.7	73.52
Bra013314.1-P	Field mustard	plastid	73.7	73.52
AT4G18480.1	Thale cress	plastid	73.22	72.88
CDY50485	Canola	plastid	55.45	69.23
CDX87756	Canola	plastid	55.21	68.93
Bra022000.1-P	Field mustard	plastid	54.98	68.64
GSMUA_Achr6P21670_001	Banana	plastid	52.61	57.66
EER93223	Sorghum	plastid	32.7	18.28

Protein Annotations

KEGG:00860+6.6.1.1	Gene3D:1.10.8.80	Gene3D:3.40.50.300	MapMan:7.12.6.1.3	EntrezGene:8079870	InterPro:AAA+_ATPase
UniProt:C5YSM6	ncoils:Coil	EnsemblPlants:EES16721	ProteinID:EES16721	ProteinID:EES16721.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0015979	GO:GO:0015995	GO:GO:0016851	GO:GO:0016874
InterPro:Mg_chelatase_ATPase-isu	InterPro:Mg_chelatse_chII_dom	InterPro:P-loop_NTPase	PFAM:PF01078	PANTHER:PTHR32039	PANTHER:PTHR32039:SF9
MetaCyc:PWY-5531	MetaCyc:PWY-7159	SMART:SM00382	EnsemblPlantsGene:SORBI_3008G051000	SUPFAM:SSF52540	unigene:Sbi.2438
TIGRFAMs:TIGR02030	UniParc:UPI0001A88695	RefSeq:XP_002442883.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:-:5060921..5062830

Molecular Weight (calculated)

45823.1 Da

IEP (calculated)

5.249

GRAVY (calculated)

-0.145

Length

422 amino acids

Sequence
(BLAST)

001: MPLPPLLPAM ASTFSPTSAA RALLPASTSR PLFLAAASSG RIQPSRKGLD FRRGRFTVCN VAAPTAAEQE ATASSAAKES QRPVYPFAAI VGQDEMKLCL
101: LLNVIDPKIG GVMIMGDRGT GKSTTVRSLV DLLPDIRVVV GDPFNSDPDD PEVMGPEVRE RVLRGDAGLP VTTAKITMVD LPLGATEDRV CGTIDIEKAL
201: TEGVKAFEPG LLAKANRGIL YVDEVNLLDD HLVDVLLDSA ASGWNTVERE GISISHPARF ILIGSGNPEE GELRPQLLDR FGMHAQVGTV RDAELRVKIV
301: EERARFDRDP KTFRESYNEE QEKLQQQISS ARSNLGAVQI DHDLRVKISK VCSELNVDGL RGDIVTNRAA KALAALKGRD SVTVEDIATV IPNCLRHRLR
401: KDPLESIDSG LLVIEKFYEV FS

Best Arabidopsis Sequence Match ( AT5G45930.1 )
(BLAST)

001: MASLLGRSPS SILTCPRISS PSSTSSMSHL CFGPEKLSGR IQFNPKKNRS RYHVSVMNVA TEINSVEQAK KIDSKESARP VYPFAAIVGQ DEMKLCLLLN
101: VIDPKIGGVM IMGDRGTGKS TTVRSLVDLL PEITVVSGDP YNSDPRDPEC MGKEVREKVQ KGEELSVIET KINMVDLPLG ATEDRVCGTI DIEKALTEGV
201: KAFEPGLLAK ANRGILYVDE VNLLDDHLVD VLLDSAASGW NTVEREGISI SHPARFILIG SGNPEEGELR PQLLDRFGMH AQVGTVRDAE LRVKIVEERA
301: RFDSNPKEFR ETYQEEQLKL QEQITTARSN LSAVQIDQDL KVKISKVCAE LDVDGLRGDM VINRAARALA ALQGRDQVTA EDVGIVIPNC LRHRLRKDPL
401: ESMDSGILVT EKFYEVFT

Arabidopsis Description

CHLI2Magnesium-chelatase subunit ChlI-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q5XF33]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.