CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013013_P003	Maize	plastid	94.57	94.57
Os03t0811100-01	Rice	plastid	87.28	87.4
VIT_06s0061g00010.t01	Wine grape	cytosol	69.54	86.78
GSMUA_Achr8P17110_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	46.36	84.75
TraesCS5B01G477800.1	Wheat	plastid	85.3	84.63
TraesCS5A01G466100.1	Wheat	plastid	84.5	83.84
KRH77667	Soybean	nucleus, plastid	78.54	79.07
KRH27819	Soybean	plastid	78.41	78.93
Solyc04g015490.2.1	Tomato	nucleus, plastid	79.34	78.2
TraesCS5D01G478900.1	Wheat	plastid	84.24	78.04
CDX95054	Canola	plastid	77.35	77.45
Bra018619.1-P	Field mustard	plastid	77.35	77.25
CDX93557	Canola	plastid	77.22	77.12
AT1G08520.1	Thale cress	plastid	77.35	76.84
GSMUA_Achr8P17100_001	Banana	plastid	34.3	70.96
VIT_00s0965g00010.t01	Wine grape	plastid	9.8	52.48
EES16721	Sorghum	plastid	18.28	32.7

Protein Annotations

KEGG:00860+6.6.1.1	Gene3D:1.10.8.80	Gene3D:3.40.50.300	Gene3D:3.40.50.410	MapMan:7.12.6.1.1	EntrezGene:8057398
InterPro:AAA+_ATPase	UniProt:C5WW04	EnsemblPlants:EER93223	ProteinID:EER93223	ProteinID:EER93223.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009534	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979
GO:GO:0015995	GO:GO:0016851	GO:GO:0016874	InterPro:IPR002035	InterPro:IPR036465	InterPro:Mg_chelatase_ATPase-dsu
InterPro:Mg_chelatse_chII_dom	InterPro:P-loop_NTPase	PFAM:PF01078	PFAM:PF13519	PFscan:PS50234	PANTHER:PTHR43473
PANTHER:PTHR43473:SF2	MetaCyc:PWY-5531	MetaCyc:PWY-7159	SMART:SM00327	SMART:SM00382	EnsemblPlantsGene:SORBI_3001G041800
SUPFAM:SSF52540	SUPFAM:SSF53300	unigene:Sbi.10816	TIGRFAMs:TIGR02031	UniParc:UPI0001A829FD	InterPro:VWF_A
RefSeq:XP_002466225.1	SEG:seg	InterPro:vWFA_dom_sf	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:3112405..3122688

Molecular Weight (calculated)

81724.5 Da

IEP (calculated)

5.226

GRAVY (calculated)

-0.289

Length

755 amino acids

Sequence
(BLAST)

001: MATATALSTS LPHLPPRRAA SFPSAAAVSL PVSSRAARLR ESRLAAAAPA ASEVLESTNG AIPTAAKGGA GRGYGREYFP LAAVVGQDAI KTALLLGAID
101: REIGGIAISG KRGTAKTVMA RGLHAMLPPI EVVVGSIANA DPSSPDEWED GLADQIQYDS DGNVKTEIVK TPFVQIPLGV TEDRLIGSVD VEASVRSGTT
201: VFQPGLLAEA HRGVLYVDEI NLLDDGISNL LLNVLTEGVN IVEREGISFR HPCKPLLIAT YNPEEGSVRE HLLDRIAINL SADLPMSFDD RVAAVDIATR
301: FQESSKEVFK MVEEETETAK TQIILAREYL KDVNISTEQL KYLVMEAIRG GCQGHRAELY AARVAKCLAA MEGREKVFVD DLKKAVELVI LPRSILSDNP
401: QDQQQEQPPP PPPPPPPENQ DSSEDQDEED DDQEDDDEEN EQQDQQIPEE FIFDAEGGLV DDKLLFFAQQ AQRRRGKAGR AKNVIFSEDR GRYIKPMLPK
501: GPVRRLAVDA TLRAAAPYQK LRREKERDKA RKVFVEKTDM RAKRMARKAG ALVIFVVDAS GSMALNRMQN AKGAALKLLA ESYTSRDQVS IIPFRGDYAE
601: VLLPPSRSIA MARKRLEKLP CGGGSPLAHG LSTAVRVGLN AEKSGDVGRI MIVAITDGRA NVSLKRSTDP EAAAASDAPR PSSQELKDEI LEVAGKIYKA
701: GMSLLVIDTE NKFVSTGFAK EIARVAQGKY YYLPNASDAV ISAATKTALT DLKSS

Best Arabidopsis Sequence Match ( AT1G08520.1 )
(BLAST)

001: MAMTPVASSS PVSTCRLFRC NLLPDLLPKP LFLSLPKRNR IASCRFTVRA SANATVESPN GVPASTSDTD TETDTTSYGR QFFPLAAVVG QEGIKTALLL
101: GAVDREIGGI AISGRRGTAK TVMARGLHEI LPPIEVVVGS ISNADPACPD EWEDDLDERI EYNADNTIKT EIVKSPFIQI PLGVTEDRLI GSVDVEESVK
201: RGTTVFQPGL LAEAHRGVLY VDEINLLDEG ISNLLLNVLT DGVNIVEREG ISFRHPCKPL LIATYNPEEG AVREHLLDRV AINLSADLPM SFEDRVAAVG
301: IATQFQERCN EVFRMVNEET ETAKTQIILA REYLKDVKIS REQLKYLVLE AVRGGVQGHR AELYAARVAK CLAAIEGREK VTIDDLRKAV ELVILPRSSL
401: DETPPEQQNQ PPPPPPPPQN SESGEEENEE EQEEEEEDES NEENENEQQQ DQIPEEFIFD AEGGLVDEKL LFFAQQAQKR RGKAGRAKNV IFSEDRGRYI
501: KPMLPKGPVK RLAVDATLRA AAPYQKLRRE KDISGTRKVF VEKTDMRAKR MARKAGALVI FVVDASGSMA LNRMQNAKGA ALKLLAESYT SRDQVSIIPF
601: RGDAAEVLLP PSRSIAMARN RLERLPCGGG SPLAHGLTTA VRVGLNAEKS GDVGRIMIVA ITDGRANITL KRSTDPESIA PDAPRPTSKE LKDEILEVAG
701: KIYKAGMSLL VIDTENKFVS TGFAKEIARV AQGKYYYLPN ASDAVISATT RDALSDLKNS

Arabidopsis Description

CHLDMg-protoporphyrin IX chelatase [Source:UniProtKB/TrEMBL;Acc:A0A178W355]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.