Factsheet for Solyc04g015490.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0061g00010.t01	Wine grape	cytosol	69.97	88.59
GSMUA_Achr8P17110_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	44.13	81.84
KRH77667	Soybean	nucleus, plastid	78.59	80.27
KRH27819	Soybean	plastid	78.59	80.27
CDX95054	Canola	plastid	78.2	79.44
Zm00001d013013_P003	Maize	plastid	78.2	79.34
EER93223	Sorghum	plastid	78.2	79.34
CDX93557	Canola	plastid	78.2	79.23
Bra018619.1-P	Field mustard	plastid	78.2	79.23
Os03t0811100-01	Rice	plastid	77.94	79.18
AT1G08520.1	Thale cress	plastid	77.81	78.42
TraesCS5A01G466100.1	Wheat	plastid	77.42	77.92
TraesCS5B01G477800.1	Wheat	plastid	77.28	77.79
TraesCS5D01G478900.1	Wheat	plastid	77.55	72.88
GSMUA_Achr8P17100_001	Banana	plastid	33.55	70.41
VIT_00s0965g00010.t01	Wine grape	plastid	10.18	55.32
Solyc10g008740.2.1	Tomato	plastid	17.1	30.68

Protein Annotations

KEGG:00860+6.6.1.1	Gene3D:1.10.8.80	Gene3D:3.40.50.300	Gene3D:3.40.50.410	MapMan:7.12.6.1.1	InterPro:AAA+_ATPase
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015979	GO:GO:0015995
GO:GO:0016851	GO:GO:0016874	InterPro:IPR002035	InterPro:IPR036465	UniProt:K4BQ51	InterPro:Mg_chelatase_ATPase-dsu
InterPro:Mg_chelatse_chII_dom	InterPro:P-loop_NTPase	PFAM:PF01078	PFAM:PF13519	PFscan:PS50234	PANTHER:PTHR43473
PANTHER:PTHR43473:SF2	SMART:SM00327	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF53300	EnsemblPlantsGene:Solyc04g015490.2
EnsemblPlants:Solyc04g015490.2.1	TIGRFAMs:TIGR02031	UniParc:UPI0002766BC2	InterPro:VWF_A	SEG:seg	InterPro:vWFA_dom_sf

Description

Magnesium-chelatase subunit ChlD, chloroplastic [Source:Projected from Arabidopsis thaliana (AT1G08520) UniProtKB/Swiss-Prot;Acc:Q9SJE1]

Coordinates

chr4:+:5692397..5708956

Molecular Weight (calculated)

83922.9 Da

IEP (calculated)

5.029

GRAVY (calculated)

-0.365

Length

766 amino acids

Sequence
(BLAST)

001: MTFSSSFCTS TVTYTSLSSS QSSTLFTYLK PCPILSSTCF PNRKRLKFRF SINATATIDS PNGAVVAEAE EPEKKPQNNS FGRQYFPLAA VVGQDAIKTA
101: LLLGAIDREI GGIAISGKRG TAKTVMARGL HAILPPIEVV VGSMANADPN CSEEWEDGLA DRVEYDSDGN IKTQIVKSPF VQIPLGVTED RLIGSVDVEE
201: SVKSGTTVFQ PGLLAEAHRG VLYVDEINLL DEGISNLLLN VLTEGVNTVE REGISFRHPC KPLLIATYNP EEGAVREHLL DRIAINLSAD LPMSFEDRVA
301: AVDIATRFQE CSNEVFKMVD EETDNGKTQI ILAREYLKDV TVSRDQLKYL VMEAIRGGCQ GHRAELYAAR VAKCLAAIDG RERVNVDDLK KSVELVILPR
401: SSIMENPPDQ QNQPPPPPPP PPQNQDSSEE QNDEEEKEEE EEDQEDEKDE ENEQQPDQVP DEFIFDAEGG LVDEKLLFFA QQAQRRKGKA GRAKNVIFSE
501: DRGRYIKPML PKGPVKRLAV DATLRAAAPY QKLRRAKDVQ KSRKVYVEKT DMRAKRMARK AGALVIFVVD ASGSMALNRM QNAKGAALKL LAESYTSRDQ
601: VCIIPFRGDA AEVLLPPSRS ISMARNRLEK LPCGGGSPLA HGLTTAVRVG MNAEKSGDVG RIMIVAITDG RANISLKRSN DPEAEASDVP RPSAQELKDE
701: ILEVAGKIYK AGMSLLVIDT ENKFVSTGFA KEIARVAQGK YYYLPNASDA VISAATKDAL STLKES

Best Arabidopsis Sequence Match ( AT1G08520.1 )
(BLAST)

001: MAMTPVASSS PVSTCRLFRC NLLPDLLPKP LFLSLPKRNR IASCRFTVRA SANATVESPN GVPASTSDTD TETDTTSYGR QFFPLAAVVG QEGIKTALLL
101: GAVDREIGGI AISGRRGTAK TVMARGLHEI LPPIEVVVGS ISNADPACPD EWEDDLDERI EYNADNTIKT EIVKSPFIQI PLGVTEDRLI GSVDVEESVK
201: RGTTVFQPGL LAEAHRGVLY VDEINLLDEG ISNLLLNVLT DGVNIVEREG ISFRHPCKPL LIATYNPEEG AVREHLLDRV AINLSADLPM SFEDRVAAVG
301: IATQFQERCN EVFRMVNEET ETAKTQIILA REYLKDVKIS REQLKYLVLE AVRGGVQGHR AELYAARVAK CLAAIEGREK VTIDDLRKAV ELVILPRSSL
401: DETPPEQQNQ PPPPPPPPQN SESGEEENEE EQEEEEEDES NEENENEQQQ DQIPEEFIFD AEGGLVDEKL LFFAQQAQKR RGKAGRAKNV IFSEDRGRYI
501: KPMLPKGPVK RLAVDATLRA AAPYQKLRRE KDISGTRKVF VEKTDMRAKR MARKAGALVI FVVDASGSMA LNRMQNAKGA ALKLLAESYT SRDQVSIIPF
601: RGDAAEVLLP PSRSIAMARN RLERLPCGGG SPLAHGLTTA VRVGLNAEKS GDVGRIMIVA ITDGRANITL KRSTDPESIA PDAPRPTSKE LKDEILEVAG
701: KIYKAGMSLL VIDTENKFVS TGFAKEIARV AQGKYYYLPN ASDAVISATT RDALSDLKNS

Arabidopsis Description

CHLDMg-protoporphyrin IX chelatase [Source:UniProtKB/TrEMBL;Acc:A0A178W355]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.