Factsheet for Zm00001d013013_P003

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93223	Sorghum	plastid	94.57	94.57
Os03t0811100-01	Rice	plastid	86.23	86.34
VIT_06s0061g00010.t01	Wine grape	cytosol	69.14	86.28
GSMUA_Achr8P17110_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	46.36	84.75
TraesCS5B01G477800.1	Wheat	plastid	84.5	83.84
TraesCS5A01G466100.1	Wheat	plastid	84.5	83.84
KRH77667	Soybean	nucleus, plastid	77.75	78.27
Solyc04g015490.2.1	Tomato	nucleus, plastid	79.34	78.2
KRH27819	Soybean	plastid	77.62	78.13
CDX95054	Canola	plastid	77.75	77.85
TraesCS5D01G478900.1	Wheat	plastid	83.71	77.55
Bra018619.1-P	Field mustard	plastid	77.62	77.51
CDX93557	Canola	plastid	77.48	77.38
AT1G08520.1	Thale cress	plastid	77.75	77.24
GSMUA_Achr8P17100_001	Banana	plastid	33.91	70.14
VIT_00s0965g00010.t01	Wine grape	plastid	9.67	51.77
Zm00001d023536_P002	Maize	plastid	17.62	28.98

Protein Annotations

KEGG:00860+6.6.1.1	Gene3D:1.10.8.80	EntrezGene:103625782	Gene3D:3.40.50.300	Gene3D:3.40.50.410	MapMan:7.12.6.1.1
UniProt:A0A1D6GEW7	InterPro:AAA+_ATPase	ProteinID:AQK62121.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009534	GO:GO:0009536
GO:GO:0009570	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0015995	GO:GO:0016851
GO:GO:0016874	InterPro:IPR002035	InterPro:IPR036465	InterPro:Mg_chelatase_ATPase-dsu	InterPro:Mg_chelatse_chII_dom	InterPro:P-loop_NTPase
PFAM:PF01078	PFAM:PF13519	PFscan:PS50234	PANTHER:PTHR43473	PANTHER:PTHR43473:SF2	SMART:SM00327
SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF53300	TIGRFAMs:TIGR02031	UniParc:UPI000221EF1F	InterPro:VWF_A
EnsemblPlantsGene:Zm00001d013013	EnsemblPlants:Zm00001d013013_P003	EnsemblPlants:Zm00001d013013_T003	SEG:seg	InterPro:vWFA_dom_sf	:

Description

Mg chelataseD1Magnesium-chelatase subunit ChlD chloroplastic

Coordinates

chr5:-:3206170..3213965

Molecular Weight (calculated)

82215.1 Da

IEP (calculated)

5.169

GRAVY (calculated)

-0.309

Length

755 amino acids

Sequence
(BLAST)

001: MATPTALSTS LPYLPPRRVI SFPSAAAVSL PVTSRPARLR DSRLAAAATS ASEVLESTNG AVPTAAKDGA WRGYGREYFP LAAVVGQDAI KTALLLGAID
101: REIGGIAISG KRGTAKTVMA RGLHAMLPPI EVVVGSIANA DPNSPDEWED GLADQIQYDS DGNVKSEIVK TPFVQIPLGV TEDRLIGSVD VEASVRSGTT
201: VFQPGLLAEA HRGVLYVDEI NLLDDGISNL LLNVLTEGVN IVEREGISFR HPCKPLLIAT YNPEEGSVRE HLLDRIAINL SADLPMSFDD RVEAVDIATR
301: FQESSKEVFK MVEEKTETAK TQIIFAREYL KDVTISTEQL KYLVMEAIRG GCQGHRAELY AARVAKCLAA MEGREKVFVD DLKKAVELVI LPRSILSDNP
401: QDQQQEQPPP PPPPPPPENQ DSSEDQDEED EDQEDDEEEN EQQDQQIPEE FIFDAEGGLV DDKLLFFAQQ AQRRRGKAGR AKNVIFSEDR GRYIKPMLPK
501: GPVRRLAVDA TLRAAAPYQK LRREKERDKT RKVFVEKTDM RAKRMARKAG ALVIFVVDAS GSMALNRMQN AKGAALKLLA ESYTSRDQVS IIPFRGDYAE
601: VLLPPSRSIA MARKRLEKLP CGGGSPLAHG LSTAVRVGLN AEKSGDVGRI MIVAITDGRA NVSLKRSTDP EAAAASDAPR PSSQELKDEI LEVAGKIYKA
701: GMSLLVIDTE NKFVSTGFAK EIARVAQGKY YYLPNASDAV ISAATKTALT DLKSS

Best Arabidopsis Sequence Match ( AT1G08520.1 )
(BLAST)

001: MAMTPVASSS PVSTCRLFRC NLLPDLLPKP LFLSLPKRNR IASCRFTVRA SANATVESPN GVPASTSDTD TETDTTSYGR QFFPLAAVVG QEGIKTALLL
101: GAVDREIGGI AISGRRGTAK TVMARGLHEI LPPIEVVVGS ISNADPACPD EWEDDLDERI EYNADNTIKT EIVKSPFIQI PLGVTEDRLI GSVDVEESVK
201: RGTTVFQPGL LAEAHRGVLY VDEINLLDEG ISNLLLNVLT DGVNIVEREG ISFRHPCKPL LIATYNPEEG AVREHLLDRV AINLSADLPM SFEDRVAAVG
301: IATQFQERCN EVFRMVNEET ETAKTQIILA REYLKDVKIS REQLKYLVLE AVRGGVQGHR AELYAARVAK CLAAIEGREK VTIDDLRKAV ELVILPRSSL
401: DETPPEQQNQ PPPPPPPPQN SESGEEENEE EQEEEEEDES NEENENEQQQ DQIPEEFIFD AEGGLVDEKL LFFAQQAQKR RGKAGRAKNV IFSEDRGRYI
501: KPMLPKGPVK RLAVDATLRA AAPYQKLRRE KDISGTRKVF VEKTDMRAKR MARKAGALVI FVVDASGSMA LNRMQNAKGA ALKLLAESYT SRDQVSIIPF
601: RGDAAEVLLP PSRSIAMARN RLERLPCGGG SPLAHGLTTA VRVGLNAEKS GDVGRIMIVA ITDGRANITL KRSTDPESIA PDAPRPTSKE LKDEILEVAG
701: KIYKAGMSLL VIDTENKFVS TGFAKEIARV AQGKYYYLPN ASDAVISATT RDALSDLKNS

Arabidopsis Description

CHLDMg-protoporphyrin IX chelatase [Source:UniProtKB/TrEMBL;Acc:A0A178W355]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.