Factsheet for Zm00001d023536_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16721	Sorghum	plastid	82.14	89.34
Os03t0563300-01	Rice	plastid	79.08	87.47
TraesCS7D01G467500.1	Wheat	plastid	76.25	83.33
TraesCS7B01G382800.3	Wheat	plastid	76.25	83.33
TraesCS7A01G480700.1	Wheat	plastid	76.25	83.14
VIT_10s0003g00890.t01	Wine grape	plastid	72.11	77.7
KRH50153	Soybean	plastid	69.93	77.54
KRH21317	Soybean	nucleus, plastid	71.02	77.43
KRH10981	Soybean	nucleus, plastid	71.02	77.43
KRH20341	Soybean	plastid	69.72	76.01
PGSC0003DMT400068480	Potato	plastid	70.37	75.64
Solyc10g008740.2.1	Tomato	plastid	70.15	75.41
CDY55641	Canola	plastid	69.06	74.94
Bra012595.1-P	Field mustard	plastid	69.06	74.94
CDX99465	Canola	plastid	68.63	74.47
CDX78860	Canola	plastid	68.41	74.23
Bra013314.1-P	Field mustard	plastid	68.41	74.23
AT4G18480.1	Thale cress	plastid	68.41	74.06
CDY01542	Canola	plastid	68.85	74.0
AT5G45930.1	Thale cress	plastid	67.1	73.68
GSMUA_Achr11P...	Banana	plastid	58.61	73.3
CDY50485	Canola	plastid	49.89	67.75
CDX87756	Canola	plastid	49.89	67.75
Bra022000.1-P	Field mustard	plastid	49.46	67.16
GSMUA_Achr6P21670_001	Banana	plastid	48.15	57.4
Zm00001d013013_P003	Maize	plastid	28.98	17.62

Protein Annotations

KEGG:00860+6.6.1.1	Gene3D:1.10.8.80	Gene3D:3.40.50.300	MapMan:7.12.6.1.3	EntrezGene:732841	InterPro:AAA+_ATPase
ProteinID:AQK39514.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015979
GO:GO:0015995	GO:GO:0016851	GO:GO:0016874	UniProt:K7TMN0	InterPro:Mg_chelatase_ATPase-isu	InterPro:Mg_chelatse_chII_dom
InterPro:P-loop_NTPase	PFAM:PF01078	PANTHER:PTHR32039	PANTHER:PTHR32039:SF9	SMART:SM00382	SUPFAM:SSF52540
TIGRFAMs:TIGR02030	UniParc:UPI000221A9AB	EnsemblPlantsGene:Zm00001d023536	EnsemblPlants:Zm00001d023536_P002	EnsemblPlants:Zm00001d023536_T002	SEG:seg

Description

oil yellow1Magnesium-chelatase subunit ChlI-1 chloroplastic

Coordinates

chr10:-:9165089..9166768

Molecular Weight (calculated)

49807.7 Da

IEP (calculated)

5.977

GRAVY (calculated)

-0.172

Length

459 amino acids

Sequence
(BLAST)

001: MPLLPLLPVM ASTFSPTSAA RALLPGSTSR PLFLAASASS GNRHLTFPSP YSLCFPARSS ASAESNTPPY RPPGTLAGRI QPSRKGLDFR RGRFTVCNVA
101: APTAAEQEAT ASAAKETQRP VYPFAAIVGQ DEMKLCLLLN VIDPKIGGVM IMGDRGTGKS TTVRSLVDLL PDIRVVVGDP FNSDPDDPEV MGPEVRQRVL
201: QGDTGLPVTT AKITMVDLPL GATEDRVCGT IDIEKALTEG VKAFEPGLLA KANRGILYVD EVNLLDDHLV DVLLDSAASG WNTVEREGIS ISHPARFILI
301: GSGNPEEGEL RPQLLDRFGM HAQVGTVRDA ELRVKIVEER ARFDRDPKTF RESYHDEQEK LQQQISSARS NLGAVQIDHD LRVKISKVCS ELNVDGLRGD
401: IVTNRAAKAL AALKGRDSVT VEDIATVIPN CLRHRLRKDP LESIDSGLLV IEKFYEVFS

Best Arabidopsis Sequence Match ( AT5G45930.1 )
(BLAST)

001: MASLLGRSPS SILTCPRISS PSSTSSMSHL CFGPEKLSGR IQFNPKKNRS RYHVSVMNVA TEINSVEQAK KIDSKESARP VYPFAAIVGQ DEMKLCLLLN
101: VIDPKIGGVM IMGDRGTGKS TTVRSLVDLL PEITVVSGDP YNSDPRDPEC MGKEVREKVQ KGEELSVIET KINMVDLPLG ATEDRVCGTI DIEKALTEGV
201: KAFEPGLLAK ANRGILYVDE VNLLDDHLVD VLLDSAASGW NTVEREGISI SHPARFILIG SGNPEEGELR PQLLDRFGMH AQVGTVRDAE LRVKIVEERA
301: RFDSNPKEFR ETYQEEQLKL QEQITTARSN LSAVQIDQDL KVKISKVCAE LDVDGLRGDM VINRAARALA ALQGRDQVTA EDVGIVIPNC LRHRLRKDPL
401: ESMDSGILVT EKFYEVFT

Arabidopsis Description

CHLI2Magnesium-chelatase subunit ChlI-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q5XF33]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.