CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50153	Soybean	plastid	91.69	93.24
KRH10981	Soybean	nucleus, plastid	84.32	84.32
KRH21317	Soybean	nucleus, plastid	84.32	84.32
VIT_10s0003g00890.t01	Wine grape	plastid	82.9	81.92
Os03t0563300-01	Rice	plastid	76.72	77.83
Bra013314.1-P	Field mustard	plastid	78.15	77.78
CDX99465	Canola	plastid	78.15	77.78
AT5G45930.1	Thale cress	plastid	77.2	77.75
CDX78860	Canola	plastid	77.91	77.54
Bra012595.1-P	Field mustard	plastid	77.67	77.31
PGSC0003DMT400068480	Potato	plastid	78.38	77.28
CDY55641	Canola	plastid	77.43	77.07
Solyc10g008740.2.1	Tomato	plastid	77.91	76.81
AT4G18480.1	Thale cress	plastid	77.2	76.65
CDY01542	Canola	plastid	77.67	76.58
TraesCS7B01G382800.3	Wheat	plastid	76.25	76.43
TraesCS7D01G467500.1	Wheat	plastid	76.01	76.19
TraesCS7A01G480700.1	Wheat	plastid	75.53	75.53
EES16721	Sorghum	plastid	75.53	75.36
GSMUA_Achr11P...	Banana	plastid	64.85	74.39
CDY50485	Canola	plastid	57.24	71.3
CDX87756	Canola	plastid	57.01	71.01
Bra022000.1-P	Field mustard	plastid	56.77	70.71
Zm00001d023536_P002	Maize	plastid	76.01	69.72
GSMUA_Achr6P21670_001	Banana	plastid	51.78	56.62
KRH77667	Soybean	nucleus, plastid	33.49	18.8
KRH27819	Soybean	plastid	32.3	18.13

Protein Annotations

KEGG:00860+6.6.1.1	Gene3D:1.10.8.80	EntrezGene:100801560	Gene3D:3.40.50.300	MapMan:7.12.6.1.3	InterPro:AAA+_ATPase
EMBL:ACUP02008254	EnsemblPlantsGene:GLYMA_13G171800	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015979
GO:GO:0015995	GO:GO:0016851	GO:GO:0016874	UniProt:I1M038	EnsemblPlants:KRH20341	ProteinID:KRH20341
ProteinID:KRH20341.1	InterPro:Mg_chelatase_ATPase-isu	InterPro:Mg_chelatse_chII_dom	InterPro:P-loop_NTPase	PFAM:PF01078	PANTHER:PTHR32039
PANTHER:PTHR32039:SF9	MetaCyc:PWY-5531	MetaCyc:PWY-7159	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR02030
UniParc:UPI000233B67D	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:28583976..28586667

Molecular Weight (calculated)

46110.4 Da

IEP (calculated)

6.685

GRAVY (calculated)

-0.141

Length

421 amino acids

Sequence
(BLAST)

001: MASTFGASSI TFLSSRYYSS QSLATDSPSL TTVQIFGRKF CGGGNGFHSV KGRSLFPVAS VLATQLNSAQ QAQKIAFTES QRPVYPFSAI VGQDEMKLCL
101: LLNVIDPKIG GVMIMGDRGT GKSTTVRSLV DLLPEIKVVA GDPYNSDPED PEFMGVEVRE RVIKGEQLQV VSSKINMVDL PLGATEDRVC GTIDIEKALT
201: EGVKAFEPGL LAKANRGILY VDEVNLLDDH LVDVLLDSAA SGWNTVEREG ISISHPARFI LIGSGNPEEG ELRPQLLDRF GMHAQVGTVR DAELRVKIVE
301: ERARFDKNPK VFRDSYKAEQ QNLQQQIASA RSFLSSVQID RNLKVKISKV CAELNVDGLR GDIVTNRAAK ALAALKGRDK VSAEDIATVI PNCLRHRLRK
401: DPLESIDSGL LVLEKFYEVF R

Best Arabidopsis Sequence Match ( AT5G45930.1 )
(BLAST)

001: MASLLGRSPS SILTCPRISS PSSTSSMSHL CFGPEKLSGR IQFNPKKNRS RYHVSVMNVA TEINSVEQAK KIDSKESARP VYPFAAIVGQ DEMKLCLLLN
101: VIDPKIGGVM IMGDRGTGKS TTVRSLVDLL PEITVVSGDP YNSDPRDPEC MGKEVREKVQ KGEELSVIET KINMVDLPLG ATEDRVCGTI DIEKALTEGV
201: KAFEPGLLAK ANRGILYVDE VNLLDDHLVD VLLDSAASGW NTVEREGISI SHPARFILIG SGNPEEGELR PQLLDRFGMH AQVGTVRDAE LRVKIVEERA
301: RFDSNPKEFR ETYQEEQLKL QEQITTARSN LSAVQIDQDL KVKISKVCAE LDVDGLRGDM VINRAARALA ALQGRDQVTA EDVGIVIPNC LRHRLRKDPL
401: ESMDSGILVT EKFYEVFT

Arabidopsis Description

CHLI2Magnesium-chelatase subunit ChlI-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q5XF33]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.