CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022000.1-P	Field mustard	plastid	98.82	98.82
CDX87756	Canola	plastid	97.34	97.34
AT5G45930.1	Thale cress	plastid	85.8	69.38
CDX99465	Canola	plastid	80.18	64.07
CDY55641	Canola	plastid	79.59	63.59
CDX78860	Canola	plastid	79.29	63.36
CDY01542	Canola	plastid	79.88	63.23
KRH21317	Soybean	nucleus, plastid	77.22	62.0
KRH10981	Soybean	nucleus, plastid	76.63	61.52
KRH50153	Soybean	plastid	73.08	59.66
VIT_10s0003g00890.t01	Wine grape	plastid	74.85	59.39
Solyc10g008740.2.1	Tomato	plastid	72.78	57.61
KRH20341	Soybean	plastid	71.3	57.24
PGSC0003DMT400068480	Potato	plastid	72.19	57.14
Os03t0563300-01	Rice	plastid	68.34	55.66
EES16721	Sorghum	plastid	69.23	55.45
TraesCS7B01G382800.3	Wheat	plastid	68.34	55.0
TraesCS7D01G467500.1	Wheat	plastid	68.34	55.0
TraesCS7A01G480700.1	Wheat	plastid	68.34	54.87
Zm00001d023536_P002	Maize	plastid	67.75	49.89
GSMUA_Achr11P...	Banana	plastid	54.14	49.86
GSMUA_Achr6P21670_001	Banana	plastid	40.24	35.32
CDX95054	Canola	plastid	28.4	12.73
CDX93557	Canola	plastid	28.11	12.57

Protein Annotations

EnsemblPlants:CDY50485	EnsemblPlantsGene:GSBRNA2T00096869001	Gene3D:1.10.8.80	Gene3D:3.40.50.300	InterPro:P-loop_NTPase	ncoils:Coil
PANTHER:PTHR32039	PANTHER:PTHR32039:SF9	ProteinID:CDY50485	ProteinID:CDY50485.1	SEG:seg	SUPFAM:SSF52540
UniParc:UPI0004EE985A	UniProt:A0A078IHP2	MapMan:50.6.6	:	:	:

Description

BnaA02g24150DBnaA02g24150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IHP2]

Coordinates

chrLK032916:+:29163..30679

Molecular Weight (calculated)

37574.4 Da

IEP (calculated)

7.027

GRAVY (calculated)

-0.350

Length

338 amino acids

Sequence
(BLAST)

001: MVSLLGTSPS SILSCPRLSS TPLTSPVCFR PGNTFGGKLY RRIQSETKKS RSRHHVLVTN VATGINSIEQ AKKIDSKESA RPVYPFAAIV GQDEMKLCLL
101: LNVIDPKIGG VMIMGDRGTG KSTTVRSLVD LLPEITVVAG DPYNSDPRDP EFMGKEVRER VRKGEELDVM ETKINMVDLP LGNPEEGELR PQLLDRFGMH
201: AQVGTVRDAE LRVKIVEERA RFDSNPKEFR ESYLEEQMKL QEQITSARSN LSGVEIDQDL KVKISRVCAE LDVDGLRGDI VTNRAARALA ALKGRDHVTA
301: EDVGIVIPNC LRHRLRKDPL ESMDSGIVVT EKFYEVFS

Best Arabidopsis Sequence Match ( AT5G45930.1 )
(BLAST)

001: MASLLGRSPS SILTCPRISS PSSTSSMSHL CFGPEKLSGR IQFNPKKNRS RYHVSVMNVA TEINSVEQAK KIDSKESARP VYPFAAIVGQ DEMKLCLLLN
101: VIDPKIGGVM IMGDRGTGKS TTVRSLVDLL PEITVVSGDP YNSDPRDPEC MGKEVREKVQ KGEELSVIET KINMVDLPLG ATEDRVCGTI DIEKALTEGV
201: KAFEPGLLAK ANRGILYVDE VNLLDDHLVD VLLDSAASGW NTVEREGISI SHPARFILIG SGNPEEGELR PQLLDRFGMH AQVGTVRDAE LRVKIVEERA
301: RFDSNPKEFR ETYQEEQLKL QEQITTARSN LSAVQIDQDL KVKISKVCAE LDVDGLRGDM VINRAARALA ALQGRDQVTA EDVGIVIPNC LRHRLRKDPL
401: ESMDSGILVT EKFYEVFT

Arabidopsis Description

CHLI2Magnesium-chelatase subunit ChlI-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q5XF33]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.