Factsheet for TraesCS7D01G467500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G382800.3	Wheat	plastid	98.33	98.33
TraesCS7A01G480700.1	Wheat	plastid	96.9	96.67
Os03t0563300-01	Rice	plastid	89.05	90.12
EES16721	Sorghum	plastid	83.57	83.18
VIT_10s0003g00890.t01	Wine grape	plastid	78.33	77.23
PGSC0003DMT400068480	Potato	plastid	78.1	76.81
KRH50153	Soybean	plastid	75.71	76.81
KRH21317	Soybean	nucleus, plastid	76.67	76.48
Solyc10g008740.2.1	Tomato	plastid	77.62	76.35
Zm00001d023536_P002	Maize	plastid	83.33	76.25
KRH10981	Soybean	nucleus, plastid	76.43	76.25
KRH20341	Soybean	plastid	76.19	76.01
Bra012595.1-P	Field mustard	plastid	75.48	74.94
CDY55641	Canola	plastid	75.48	74.94
AT5G45930.1	Thale cress	plastid	73.81	74.16
AT4G18480.1	Thale cress	plastid	74.76	74.06
CDY01542	Canola	plastid	75.24	74.0
CDX99465	Canola	plastid	74.52	74.0
GSMUA_Achr11P...	Banana	plastid	64.52	73.84
CDX78860	Canola	plastid	74.29	73.76
Bra013314.1-P	Field mustard	plastid	74.29	73.76
CDY50485	Canola	plastid	55.0	68.34
CDX87756	Canola	plastid	54.76	68.05
Bra022000.1-P	Field mustard	plastid	54.52	67.75
GSMUA_Achr6P21670_001	Banana	plastid	52.86	57.66
TraesCS5D01G478900.1	Wheat	plastid	32.38	16.69

Protein Annotations

KEGG:00860+6.6.1.1	Gene3D:1.10.8.80	Gene3D:3.40.50.300	MapMan:7.12.6.1.3	InterPro:AAA+_ATPase	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015995	GO:GO:0016851	InterPro:Mg_chelatase_ATPase-isu	InterPro:Mg_chelatse_chII_dom
InterPro:P-loop_NTPase	PFAM:PF01078	PANTHER:PTHR32039	PANTHER:PTHR32039:SF9	SMART:SM00382	SUPFAM:SSF52540
TIGRFAMs:TIGR02030	EnsemblPlantsGene:TraesCS7D01G467500	EnsemblPlants:TraesCS7D01G467500.1	TIGR:cd00009	SEG:seg	:

Description

No Description!

Coordinates

chr7D:-:580852973..580854606

Molecular Weight (calculated)

45337.5 Da

IEP (calculated)

5.371

GRAVY (calculated)

-0.096

Length

420 amino acids

Sequence
(BLAST)

001: MAMASPFSPA SAAATSPALF SVSTSRPLSL TTAATAAISA RAPSRTSRGF RRGRFAVCNV AAPSAAVQET KPAAGAKESQ RPVYPFPAIV GQDEMKLCLL
101: LNVIDPKIGG VMIMGDRGTG KSTTVRSLVD LLPDISVVVG DPFNSDPFDP EVMGPEVRDR LLKGEDLPVT TTKITMVDLP LGATEDRVCG TIDIEKALTE
201: GVKAFEPGLL AKANRGILYV DEVNLLDDHL VDVLLDSAAS GWNTVEREGI SISHPARFIL IGSGNPEEGE LRPQLLDRFG MHAQVGTVRD AELRVKIVEE
301: RARFDKDPKT FRQSYLEEQG KLQDQITSAR SNLGSVQLDH DLRVKISQVC SELNVDGLRG DIVTNRAAKA LAALKGRDIV TVEDIATVIP NCLRHRLRKD
401: PLESIDSGLL VVEKFYEVFG

Best Arabidopsis Sequence Match ( AT5G45930.1 )
(BLAST)

001: MASLLGRSPS SILTCPRISS PSSTSSMSHL CFGPEKLSGR IQFNPKKNRS RYHVSVMNVA TEINSVEQAK KIDSKESARP VYPFAAIVGQ DEMKLCLLLN
101: VIDPKIGGVM IMGDRGTGKS TTVRSLVDLL PEITVVSGDP YNSDPRDPEC MGKEVREKVQ KGEELSVIET KINMVDLPLG ATEDRVCGTI DIEKALTEGV
201: KAFEPGLLAK ANRGILYVDE VNLLDDHLVD VLLDSAASGW NTVEREGISI SHPARFILIG SGNPEEGELR PQLLDRFGMH AQVGTVRDAE LRVKIVEERA
301: RFDSNPKEFR ETYQEEQLKL QEQITTARSN LSAVQIDQDL KVKISKVCAE LDVDGLRGDM VINRAARALA ALQGRDQVTA EDVGIVIPNC LRHRLRKDPL
401: ESMDSGILVT EKFYEVFT

Arabidopsis Description

CHLI2Magnesium-chelatase subunit ChlI-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q5XF33]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.