Factsheet for VIT_10s0003g00890.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21317	Soybean	nucleus, plastid	83.57	84.56
KRH50153	Soybean	plastid	82.16	84.54
KRH10981	Soybean	nucleus, plastid	83.33	84.32
PGSC0003DMT400068480	Potato	plastid	83.1	82.9
KRH20341	Soybean	plastid	81.92	82.9
Solyc10g008740.2.1	Tomato	plastid	82.39	82.2
AT5G45930.1	Thale cress	plastid	78.87	80.38
CDX99465	Canola	plastid	79.58	80.14
Os03t0563300-01	Rice	plastid	77.93	80.0
Bra013314.1-P	Field mustard	plastid	79.34	79.91
Bra012595.1-P	Field mustard	plastid	79.34	79.91
AT4G18480.1	Thale cress	plastid	79.34	79.72
CDX78860	Canola	plastid	79.11	79.67
CDY55641	Canola	plastid	79.11	79.67
CDY01542	Canola	plastid	79.81	79.63
TraesCS7B01G382800.3	Wheat	plastid	77.7	78.81
TraesCS7D01G467500.1	Wheat	plastid	77.23	78.33
TraesCS7A01G480700.1	Wheat	plastid	77.23	78.15
EES16721	Sorghum	plastid	77.23	77.96
CDY50485	Canola	plastid	59.39	74.85
CDX87756	Canola	plastid	59.15	74.56
GSMUA_Achr11P...	Banana	plastid	64.08	74.39
Bra022000.1-P	Field mustard	plastid	58.92	74.26
Zm00001d023536_P002	Maize	plastid	77.7	72.11
GSMUA_Achr6P21670_001	Banana	plastid	51.88	57.4
VIT_00s0965g00010.t01	Wine grape	plastid	10.09	30.5
VIT_06s0061g00010.t01	Wine grape	cytosol	21.13	14.88

Protein Annotations

KEGG:00860+6.6.1.1	Gene3D:1.10.8.80	EntrezGene:100267459	wikigene:100267459	Gene3D:3.40.50.300	MapMan:7.12.6.1.3
InterPro:AAA+_ATPase	ProteinID:CCB55661	ProteinID:CCB55661.1	ncoils:Coil	UniProt:F6HM73	EMBL:FN595992
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015979	GO:GO:0015995	GO:GO:0016851
GO:GO:0016874	EntrezGene:LOC100267459	wikigene:LOC100267459	InterPro:Mg_chelatase_ATPase-isu	InterPro:Mg_chelatse_chII_dom	InterPro:P-loop_NTPase
PFAM:PF01078	PANTHER:PTHR32039	PANTHER:PTHR32039:SF9	SMART:SM00382	SUPFAM:SSF52540	TIGR:TC53926
TIGRFAMs:TIGR02030	UniParc:UPI00019840E0	ArrayExpress:VIT_10s0003g00890	EnsemblPlantsGene:VIT_10s0003g00890	EnsemblPlants:VIT_10s0003g00890.t01	unigene:Vvi.1448
RefSeq:XP_002276262	RefSeq:XP_002276262.1	SEG:seg	:	:	:

Description

Mg-protoporphyrin IX chelatase [Source:UniProtKB/TrEMBL;Acc:F6HM73]

Coordinates

chr10:-:2130122..2132170

Molecular Weight (calculated)

46438.9 Da

IEP (calculated)

5.757

GRAVY (calculated)

-0.165

Length

426 amino acids

Sequence
(BLAST)

001: MAGIFGTSSS STAILASRPL SSTSKSSIPS LSLPLCTWRS HGKKLYGGVG VQLKKGRSQF HVAVSNVATE INPAEKAQKL AAEESQRPVY PFAAIVGQDE
101: MKLCLLLNVI DPKIGGVMIM GDRGTGKSTT VRSLVDLLPE IRVVSGDPFN SDPEDPESMG MEVRESILKG ELLSIVMTKI NMVDLPLGAT EDRVCGTIDI
201: EKALTEGVKA FEPGLLAKAN RGILYVDEVN LLDDHLVDVL LDSAASGWNT VEREGISISH PARFILIGSG NPEEGELRPQ LLDRFGMHAQ VGTVRDAELR
301: VKIVEERARF DKNPKEFRDS YKAEQEKLQQ QISSARSDLS SVQIDHDLRV KISKVCAELN VDGLRGDIVT NRAAKALAAL KGRDNVTAED IATVIPNCLR
401: HRLRKDPLES IDSGLLVIEK FYEVFS

Best Arabidopsis Sequence Match ( AT5G45930.1 )
(BLAST)

001: MASLLGRSPS SILTCPRISS PSSTSSMSHL CFGPEKLSGR IQFNPKKNRS RYHVSVMNVA TEINSVEQAK KIDSKESARP VYPFAAIVGQ DEMKLCLLLN
101: VIDPKIGGVM IMGDRGTGKS TTVRSLVDLL PEITVVSGDP YNSDPRDPEC MGKEVREKVQ KGEELSVIET KINMVDLPLG ATEDRVCGTI DIEKALTEGV
201: KAFEPGLLAK ANRGILYVDE VNLLDDHLVD VLLDSAASGW NTVEREGISI SHPARFILIG SGNPEEGELR PQLLDRFGMH AQVGTVRDAE LRVKIVEERA
301: RFDSNPKEFR ETYQEEQLKL QEQITTARSN LSAVQIDQDL KVKISKVCAE LDVDGLRGDM VINRAARALA ALQGRDQVTA EDVGIVIPNC LRHRLRKDPL
401: ESMDSGILVT EKFYEVFT

Arabidopsis Description

CHLI2Magnesium-chelatase subunit ChlI-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q5XF33]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.