Factsheet for Solyc10g008740.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068480	Potato	plastid	98.59	98.59
VIT_10s0003g00890.t01	Wine grape	plastid	82.2	82.39
KRH10981	Soybean	nucleus, plastid	80.33	81.47
KRH21317	Soybean	nucleus, plastid	80.09	81.24
KRH50153	Soybean	plastid	77.75	80.19
AT5G45930.1	Thale cress	plastid	76.81	78.47
KRH20341	Soybean	plastid	76.81	77.91
TraesCS7D01G467500.1	Wheat	plastid	76.35	77.62
TraesCS7B01G382800.3	Wheat	plastid	76.35	77.62
Os03t0563300-01	Rice	plastid	75.41	77.59
TraesCS7A01G480700.1	Wheat	plastid	76.35	77.43
CDX99465	Canola	plastid	76.58	77.31
AT4G18480.1	Thale cress	plastid	76.58	77.12
Bra013314.1-P	Field mustard	plastid	76.35	77.07
Bra012595.1-P	Field mustard	plastid	76.35	77.07
EES16721	Sorghum	plastid	76.11	77.01
CDY55641	Canola	plastid	76.11	76.83
CDX78860	Canola	plastid	76.11	76.83
CDY01542	Canola	plastid	76.58	76.58
GSMUA_Achr11P...	Banana	plastid	64.4	74.93
CDY50485	Canola	plastid	57.61	72.78
CDX87756	Canola	plastid	57.38	72.49
Bra022000.1-P	Field mustard	plastid	56.91	71.89
Zm00001d023536_P002	Maize	plastid	75.41	70.15
GSMUA_Achr6P21670_001	Banana	plastid	51.99	57.66
Solyc04g015490.2.1	Tomato	nucleus, plastid	30.68	17.1

Protein Annotations

KEGG:00860+6.6.1.1	Gene3D:1.10.8.80	Gene3D:3.40.50.300	MapMan:7.12.6.1.3	InterPro:AAA+_ATPase	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0015979	GO:GO:0015995	GO:GO:0016851	GO:GO:0016874
UniProt:K4CY51	InterPro:Mg_chelatase_ATPase-isu	InterPro:Mg_chelatse_chII_dom	InterPro:P-loop_NTPase	PFAM:PF01078	PANTHER:PTHR32039
PANTHER:PTHR32039:SF9	SMART:SM00382	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc10g008740.2	EnsemblPlants:Solyc10g008740.2.1	TIGRFAMs:TIGR02030
UniParc:UPI000276B9AE	SEG:seg	:	:	:	:

Description

Mg-protoporphyrin IX chelatase [Source:UniProtKB/TrEMBL;Acc:K4CY51]

Coordinates

chr10:+:2822974..2826287

Molecular Weight (calculated)

46436.7 Da

IEP (calculated)

6.422

GRAVY (calculated)

-0.229

Length

427 amino acids

Sequence
(BLAST)

001: MASLLGTSSS SSAAAILAST PFTSRSSKSA ALSLFPSSGH SQGRKFYGGI RLPVKKGRSQ FHVAISNVAT EISPAQEQAQ KLAEDSQRPV YPFPAIVGQD
101: EMKLCLLLNV IDPKIGGVMI MGDRGTGKST TVRSLVDLLP EIKVISGDPF NSDPDDQEVM SAEVRDKLRK GEQLPVSLTK INMVDLPLGA TEDRVCGTID
201: IEKALTEGVK AFEPGLLAKA NRGILYVDEV NLLDDHLVDV LLDSAASGWN TVEREGISIS HPARFILIGS GNPEEGELRP QLLDRFGMHA QVGTVRDAEL
301: RVKIVEERGR FDKNPKEFRE SYKGEQEKLQ SQITSARSGL SSVTIDHDLR VKISKVCAEL NVDGLRGDIV TNRAARALAA LKGRDKVTPE DIATVIPNCL
401: RHRLRKDPLE SIDSGLLVVE KFYEVFG

Best Arabidopsis Sequence Match ( AT4G18480.1 )
(BLAST)

001: MASLLGTSSS AIWASPSLSS PSSKPSSSPI CFRPGKLFGS KLNAGIQIRP KKNRSRYHVS VMNVATEINS TEQVVGKFDS KKSARPVYPF AAIVGQDEMK
101: LCLLLNVIDP KIGGVMIMGD RGTGKSTTVR SLVDLLPEIN VVAGDPYNSD PIDPEFMGVE VRERVEKGEQ VPVIATKINM VDLPLGATED RVCGTIDIEK
201: ALTEGVKAFE PGLLAKANRG ILYVDEVNLL DDHLVDVLLD SAASGWNTVE REGISISHPA RFILIGSGNP EEGELRPQLL DRFGMHAQVG TVRDADLRVK
301: IVEERARFDS NPKDFRDTYK TEQDKLQDQI STARANLSSV QIDRELKVKI SRVCSELNVD GLRGDIVTNR AAKALAALKG KDRVTPDDVA TVIPNCLRHR
401: LRKDPLESID SGVLVSEKFA EIFS

Arabidopsis Description

CHLI1Magnesium-chelatase subunit ChlI-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P16127]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.