Factsheet for TraesCS5D01G478900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G477800.1	Wheat	plastid	87.73	93.96
TraesCS5A01G466100.1	Wheat	plastid	86.87	93.04
VIT_06s0061g00010.t01	Wine grape	cytosol	62.94	84.79
EER93223	Sorghum	plastid	78.04	84.24
Zm00001d013013_P003	Maize	plastid	77.55	83.71
Os03t0811100-01	Rice	plastid	77.18	83.42
GSMUA_Achr8P17110_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	42.09	83.05
Solyc04g015490.2.1	Tomato	nucleus, plastid	72.88	77.55
CDX95054	Canola	plastid	71.66	77.45
Bra018619.1-P	Field mustard	plastid	71.78	77.38
CDX93557	Canola	plastid	71.66	77.25
KRH27819	Soybean	plastid	70.92	77.07
KRH77667	Soybean	nucleus, plastid	70.8	76.93
AT1G08520.1	Thale cress	plastid	70.8	75.92
GSMUA_Achr8P17100_001	Banana	plastid	30.55	68.22
VIT_00s0965g00010.t01	Wine grape	plastid	8.96	51.77
TraesCS7D01G467500.1	Wheat	plastid	16.69	32.38

Protein Annotations

KEGG:00860+6.6.1.1	Gene3D:1.10.8.80	Gene3D:3.40.50.300	Gene3D:3.40.50.410	MapMan:7.12.6.1.1	InterPro:AAA+_ATPase
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009534	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579
GO:GO:0009987	GO:GO:0015995	GO:GO:0016851	InterPro:IPR002035	InterPro:IPR036465	InterPro:Mg_chelatase_ATPase-dsu
InterPro:Mg_chelatse_chII_dom	InterPro:P-loop_NTPase	PFAM:PF01078	PFAM:PF13519	PFscan:PS50234	PANTHER:PTHR43473
PANTHER:PTHR43473:SF2	SMART:SM00327	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF53300	TIGRFAMs:TIGR02031
EnsemblPlantsGene:TraesCS5D01G478900	EnsemblPlants:TraesCS5D01G478900.1	InterPro:VWF_A	TIGR:cd00009	TIGR:cd01451	SEG:seg
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:517421521..517428633

Molecular Weight (calculated)

88521.9 Da

IEP (calculated)

6.538

GRAVY (calculated)

-0.344

Length

815 amino acids

Sequence
(BLAST)

001: MVFGKLLHPA VSDRTAVDPR ARTTRPRCVR CGSPGNQIRN DKRSHAHRGH SPVPMAAMAT ALSASLPHLP PRRLPSSPAA SVSLAPRGLR RREAPPRLAA
101: VASASEVLDS TNGAVPAPAS PAPSGQQQYG REYFPLAAVV GQDAIKTSLL LGAIDREVGG IAISGKRGTA KTVMARGLHA MLPPIEVVVG SIANADPNIP
201: EEWEDHLADQ VQYDADGNVK SEIVKAPFVQ IPLGVTEDRL IGSVDVEQSV RSGTTVFQPG LLAEAHRGVL YVDEINLLDD GISNLLLNVL TEGVNIVERE
301: GISFRHPCKP LLIATYNPEE GSVREHLLDR IAINLSADLP LSFDDRVAAV NIATQFQESS KDVFKMVEEE TEVAKTQIIL AREYLKDVAI STEQLKYLVM
401: EAIRGGCQGH RAELYAARVA KCLAAMEGRE KVFAEDLKKA VELVILPRSI ISDNPQEQQN QPPPPPPPPP PQNQDNAEDQ DEKEEDEEKD EEEKEDDDEE
501: NEKQDDQIPE EFIFDAEGGL VDDKLLFFAQ QAQRKKGKAG RAKNVIFSED RGRYIKPMLP KGPVRRLAVD ATLRAAAPYQ KLRREKSLDK TRKVFVEKTD
601: MRAKRMARKA GALVIFVVDA SGSMALNRMQ NAKGAALKLL AESYTSRDQV AIIPFRGDYA EVLLPPSRSI AMARKRLEKL PCGGGSPLAH GLSTAVRVGL
701: NAEKSGDVGR IMIVAITDGR ANVSLKKSND PEAAAASDAP RPSTQELKDE ILDVSAKIFK AGMSLLVIDT ENKFVSTGFA KEIARVAQGK YYYLPNASDA
801: VISAATKTAL ADLKS

Best Arabidopsis Sequence Match ( AT1G08520.1 )
(BLAST)

001: MAMTPVASSS PVSTCRLFRC NLLPDLLPKP LFLSLPKRNR IASCRFTVRA SANATVESPN GVPASTSDTD TETDTTSYGR QFFPLAAVVG QEGIKTALLL
101: GAVDREIGGI AISGRRGTAK TVMARGLHEI LPPIEVVVGS ISNADPACPD EWEDDLDERI EYNADNTIKT EIVKSPFIQI PLGVTEDRLI GSVDVEESVK
201: RGTTVFQPGL LAEAHRGVLY VDEINLLDEG ISNLLLNVLT DGVNIVEREG ISFRHPCKPL LIATYNPEEG AVREHLLDRV AINLSADLPM SFEDRVAAVG
301: IATQFQERCN EVFRMVNEET ETAKTQIILA REYLKDVKIS REQLKYLVLE AVRGGVQGHR AELYAARVAK CLAAIEGREK VTIDDLRKAV ELVILPRSSL
401: DETPPEQQNQ PPPPPPPPQN SESGEEENEE EQEEEEEDES NEENENEQQQ DQIPEEFIFD AEGGLVDEKL LFFAQQAQKR RGKAGRAKNV IFSEDRGRYI
501: KPMLPKGPVK RLAVDATLRA AAPYQKLRRE KDISGTRKVF VEKTDMRAKR MARKAGALVI FVVDASGSMA LNRMQNAKGA ALKLLAESYT SRDQVSIIPF
601: RGDAAEVLLP PSRSIAMARN RLERLPCGGG SPLAHGLTTA VRVGLNAEKS GDVGRIMIVA ITDGRANITL KRSTDPESIA PDAPRPTSKE LKDEILEVAG
701: KIYKAGMSLL VIDTENKFVS TGFAKEIARV AQGKYYYLPN ASDAVISATT RDALSDLKNS

Arabidopsis Description

CHLDMg-protoporphyrin IX chelatase [Source:UniProtKB/TrEMBL;Acc:A0A178W355]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.