CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27819	Soybean	plastid	97.07	97.07
VIT_06s0061g00010.t01	Wine grape	cytosol	71.33	88.43
GSMUA_Achr8P17110_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	46.93	85.23
Solyc04g015490.2.1	Tomato	nucleus, plastid	80.27	78.59
EER93223	Sorghum	plastid	79.07	78.54
Os03t0811100-01	Rice	plastid	78.8	78.38
Bra018619.1-P	Field mustard	plastid	78.93	78.31
CDX93557	Canola	plastid	78.93	78.31
CDX95054	Canola	plastid	78.53	78.12
Zm00001d013013_P003	Maize	plastid	78.27	77.75
AT1G08520.1	Thale cress	plastid	78.27	77.24
TraesCS5B01G477800.1	Wheat	plastid	76.93	75.82
TraesCS5A01G466100.1	Wheat	plastid	76.53	75.43
TraesCS5D01G478900.1	Wheat	plastid	76.93	70.8
GSMUA_Achr8P17100_001	Banana	plastid	32.93	67.67
VIT_00s0965g00010.t01	Wine grape	plastid	10.53	56.03
KRH20341	Soybean	plastid	18.8	33.49
KRH50153	Soybean	plastid	18.27	33.09
KRH21317	Soybean	nucleus, plastid	17.87	31.83
KRH10981	Soybean	nucleus, plastid	17.73	31.59

Protein Annotations

KEGG:00860+6.6.1.1	Gene3D:1.10.8.80	EntrezGene:100775919	Gene3D:3.40.50.300	Gene3D:3.40.50.410	MapMan:7.12.6.1.1
InterPro:AAA+_ATPase	EMBL:ACUP02000681	ncoils:Coil	EnsemblPlantsGene:GLYMA_01G226700	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0015979	GO:GO:0015995	GO:GO:0016851	GO:GO:0016874	InterPro:IPR002035
InterPro:IPR036465	UniProt:K7K5C0	EnsemblPlants:KRH77667	ProteinID:KRH77667	ProteinID:KRH77667.1	InterPro:Mg_chelatase_ATPase-dsu
InterPro:Mg_chelatse_chII_dom	InterPro:P-loop_NTPase	PFAM:PF01078	PFAM:PF13519	PFscan:PS50234	PANTHER:PTHR43473
PANTHER:PTHR43473:SF2	MetaCyc:PWY-5531	MetaCyc:PWY-7159	SMART:SM00327	SMART:SM00382	SUPFAM:SSF52540
SUPFAM:SSF53300	TIGRFAMs:TIGR02031	UniParc:UPI0000035C4D	InterPro:VWF_A	SEG:seg	InterPro:vWFA_dom_sf

Description

hypothetical protein

Coordinates

chr1:+:55505321..55515004

Molecular Weight (calculated)

81489.7 Da

IEP (calculated)

5.924

GRAVY (calculated)

-0.258

Length

750 amino acids

Sequence
(BLAST)

001: MGFALAFTAS STCCSNLQSQ SLLFAAAALR SKPCLSLCNT YRPKRIRKRS PIVGAQSENG ALVTSEKPGT NYGRQYFPLA AVVGQDAIKT ALLLGAIDPG
101: IGGIAISGKR GTAKTVMARG LHAILPPIEV VVGSIANADP TCPEEWEDGL TECLEYDSAG NIKTRIIKSP FVQIPLGITE DRLIGSVDVE ESVKTGTTVF
201: QPGLLAEAHR GVLYVDEINL LDEGISNLLL NVLSEGVNTV EREGISFKHP CRPLLIATYN PEEGAVREHL LDRIAINLSA DLPMSFENRV AAVGIATEFQ
301: ENSSQVFEMV EEETDNAKTQ IILAREYLKD VTLNRDQLKY LVIEALRGGC QGHRAELFAA RVAKCLAALE GREKVYVDDL KKAVELVILP RSIITESPPD
401: QQNQPPPPPP PPQNQESGEE QNEEEEQEDD KDEENEQQQE QLPEEFIFDA EGGLVDEKLL FFAQQAQRRR GRAGRAKNVI FSEDRGRYIK PMLPKGPVKR
501: LAVDATLRAA APYQKLRREK DSGNSRKVFV EKTDMRAKRM ARKAGALVIF VVDASGSMAL NRMQNAKGAA LKLLAESYTS RDQVSIIPFR GDAAEVLLPP
601: SRSIAMARKR LERLPCGGGS PLAHGLTTAV RVGLNAEKSG DVGRVMIVAI TDGRANISLK RSTDPEVAAA TDAPKPSAQE LKDEILEVAG KIYKAGMSLL
701: VIDTENKFVS TGFAKEIARV AQGKYYYLPN ASDAVISSAT KEALSALKSS

Best Arabidopsis Sequence Match ( AT1G08520.1 )
(BLAST)

001: MAMTPVASSS PVSTCRLFRC NLLPDLLPKP LFLSLPKRNR IASCRFTVRA SANATVESPN GVPASTSDTD TETDTTSYGR QFFPLAAVVG QEGIKTALLL
101: GAVDREIGGI AISGRRGTAK TVMARGLHEI LPPIEVVVGS ISNADPACPD EWEDDLDERI EYNADNTIKT EIVKSPFIQI PLGVTEDRLI GSVDVEESVK
201: RGTTVFQPGL LAEAHRGVLY VDEINLLDEG ISNLLLNVLT DGVNIVEREG ISFRHPCKPL LIATYNPEEG AVREHLLDRV AINLSADLPM SFEDRVAAVG
301: IATQFQERCN EVFRMVNEET ETAKTQIILA REYLKDVKIS REQLKYLVLE AVRGGVQGHR AELYAARVAK CLAAIEGREK VTIDDLRKAV ELVILPRSSL
401: DETPPEQQNQ PPPPPPPPQN SESGEEENEE EQEEEEEDES NEENENEQQQ DQIPEEFIFD AEGGLVDEKL LFFAQQAQKR RGKAGRAKNV IFSEDRGRYI
501: KPMLPKGPVK RLAVDATLRA AAPYQKLRRE KDISGTRKVF VEKTDMRAKR MARKAGALVI FVVDASGSMA LNRMQNAKGA ALKLLAESYT SRDQVSIIPF
601: RGDAAEVLLP PSRSIAMARN RLERLPCGGG SPLAHGLTTA VRVGLNAEKS GDVGRIMIVA ITDGRANITL KRSTDPESIA PDAPRPTSKE LKDEILEVAG
701: KIYKAGMSLL VIDTENKFVS TGFAKEIARV AQGKYYYLPN ASDAVISATT RDALSDLKNS

Arabidopsis Description

CHLDMg-protoporphyrin IX chelatase [Source:UniProtKB/TrEMBL;Acc:A0A178W355]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.