Factsheet for GSMUA_Achr8P17110_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 3
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0061g00010.t01	Wine grape	cytosol	84.5	57.69
KRH77667	Soybean	nucleus, plastid	85.23	46.93
KRH27819	Soybean	plastid	84.5	46.53
Zm00001d013013_P003	Maize	plastid	84.75	46.36
EER93223	Sorghum	plastid	84.75	46.36
CDX95054	Canola	plastid	83.29	45.62
AT1G08520.1	Thale cress	plastid	83.78	45.53
Os03t0811100-01	Rice	plastid	83.05	45.49
CDX93557	Canola	plastid	83.05	45.37
Bra018619.1-P	Field mustard	plastid	83.05	45.37
TraesCS5A01G466100.1	Wheat	plastid	83.05	45.07
TraesCS5B01G477800.1	Wheat	plastid	83.05	45.07
Solyc04g015490.2.1	Tomato	nucleus, plastid	81.84	44.13
TraesCS5D01G478900.1	Wheat	plastid	83.05	42.09
GSMUA_Achr11P...	Banana	plastid	4.12	4.63
GSMUA_Achr8P17100_001	Banana	plastid	0.97	1.1
GSMUA_Achr6P21670_001	Banana	plastid	0.97	1.04
VIT_00s0965g00010.t01	Wine grape	plastid	0.24	0.71

Protein Annotations

KEGG:00860+6.6.1.1	Gene3D:1.10.8.80	Gene3D:3.40.50.410	MapMan:7.12.6.1.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0015979	GO:GO:0015995	GO:GO:0016851	GO:GO:0016874	EnsemblPlantsGene:GSMUA_Achr8G17110_001
EnsemblPlants:GSMUA_Achr8P17110_001	EnsemblPlants:GSMUA_Achr8T17110_001	InterPro:IPR002035	InterPro:IPR036465	UniProt:M0TR64	InterPro:Mg_chelatase_ATPase-dsu
PFAM:PF13519	PFscan:PS50234	PANTHER:PTHR43473	PANTHER:PTHR43473:SF2	SMART:SM00327	SUPFAM:SSF53300
TIGRFAMs:TIGR02031	UniParc:UPI000296C6FE	InterPro:VWF_A	SEG:seg	InterPro:vWFA_dom_sf	:

Description

Magnesium-chelatase subunit chlD, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr8G17110_001]

Coordinates

chr8:+:16039241..16058832

Molecular Weight (calculated)

45430.4 Da

IEP (calculated)

9.154

GRAVY (calculated)

-0.488

Length

413 amino acids

Sequence
(BLAST)

001: MYHQSVPVLL FGHRAELFAA RVAKCLAALE GREKVSVDDL KKAVELVILP RSIINENPQE QQNQPPPPPP PPQNQESEDD QNPEEDQEED NDQENEQQEQ
101: QIPDEFIFDA EGGVVDEKLL FFAQQAQRRR GKAGRAKNVI FSEDRGRYIK PMLPKHLQGP VKRLAVDATL RAAAPYQKLR REKETNKSRK VFVEKSDMRA
201: KRMARKAGAL VIFVVDASGS MALNRMQNAK GAALQLLAES YTSRDQVSII PFRGDYAEVL LPPSRSIAMA RKRLERLPCG GGSPLAHGLS MAVRVGLNAE
301: KSGDVGRVMI VAITDGRANI SLKRSTDPEA AAATDTPKPS SQELKDEILD VAGKIYKAGM SLLVIDTENK FVSTGFAKEI ARVAQGKYYY LPNASDAVIS
401: ATTKEALSAL KSA

Best Arabidopsis Sequence Match ( AT1G08520.1 )
(BLAST)

001: MAMTPVASSS PVSTCRLFRC NLLPDLLPKP LFLSLPKRNR IASCRFTVRA SANATVESPN GVPASTSDTD TETDTTSYGR QFFPLAAVVG QEGIKTALLL
101: GAVDREIGGI AISGRRGTAK TVMARGLHEI LPPIEVVVGS ISNADPACPD EWEDDLDERI EYNADNTIKT EIVKSPFIQI PLGVTEDRLI GSVDVEESVK
201: RGTTVFQPGL LAEAHRGVLY VDEINLLDEG ISNLLLNVLT DGVNIVEREG ISFRHPCKPL LIATYNPEEG AVREHLLDRV AINLSADLPM SFEDRVAAVG
301: IATQFQERCN EVFRMVNEET ETAKTQIILA REYLKDVKIS REQLKYLVLE AVRGGVQGHR AELYAARVAK CLAAIEGREK VTIDDLRKAV ELVILPRSSL
401: DETPPEQQNQ PPPPPPPPQN SESGEEENEE EQEEEEEDES NEENENEQQQ DQIPEEFIFD AEGGLVDEKL LFFAQQAQKR RGKAGRAKNV IFSEDRGRYI
501: KPMLPKGPVK RLAVDATLRA AAPYQKLRRE KDISGTRKVF VEKTDMRAKR MARKAGALVI FVVDASGSMA LNRMQNAKGA ALKLLAESYT SRDQVSIIPF
601: RGDAAEVLLP PSRSIAMARN RLERLPCGGG SPLAHGLTTA VRVGLNAEKS GDVGRIMIVA ITDGRANITL KRSTDPESIA PDAPRPTSKE LKDEILEVAG
701: KIYKAGMSLL VIDTENKFVS TGFAKEIARV AQGKYYYLPN ASDAVISATT RDALSDLKNS

Arabidopsis Description

CHLDMg-protoporphyrin IX chelatase [Source:UniProtKB/TrEMBL;Acc:A0A178W355]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.