Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 5
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
28056797
|
msms PMID:
28056797
doi
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0563300-01 | Rice | plastid | 21.12 | 8.19 |
| Os03t0811100-01 | Rice | plastid | 18.01 | 3.85 |
Protein Annotations
| MapMan:22.1.2.4 | Gene3D:3.30.450.60 | EntrezGene:4334539 | ProteinID:AAP73856.1 | ProteinID:ABF99492.1 | EMBL:AK071871 |
| InterPro:AP_complex_ssu | InterPro:AP_mu_sigma_su | ProteinID:BAF13584.1 | ProteinID:BAS87003.1 | InterPro:Clathrin_sm-chain_CS | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0008565 | GO:GO:0015031 | GO:GO:0016020 |
| GO:GO:0016192 | GO:GO:0030117 | InterPro:Longin-like_dom_sf | EnsemblPlantsGene:Os03g0811300 | EnsemblPlants:Os03t0811300-01 | PFAM:PF01217 |
| PIRSF:PIRSF015588 | ScanProsite:PS00989 | PANTHER:PTHR11753 | PANTHER:PTHR11753:SF32 | UniProt:Q7XZG1 | SUPFAM:SSF64356 |
| UniParc:UPI00001AA3D9 | RefSeq:XP_015630074.1 | : | : | : | : |
Description
Similar to AP-1 complex subunit sigma-2. (Os03t0811300-01)
Coordinates
chr3:+:33969167..33971519
Molecular Weight (calculated)
18819.0 Da
IEP (calculated)
8.311
GRAVY (calculated)
-0.055
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MIHFVLLISR QGKVRLTKWY NPYPQKERSK VIKEVSTLVL TRGPKMCNFV DWHGYRVVYK RYASLYFCMC IDAADNELET LQIIHHFVEI LDRYFGNVCE
101: LDLIFNFHKA YFILDEVLIA GELQESNKKA VLRLITTQDN LVEAAKEEAS SLRNIIAQAT K
101: LDLIFNFHKA YFILDEVLIA GELQESNKKA VLRLITTQDN LVEAAKEEAS SLRNIIAQAT K
001: MIHFVLLVSR QGKVRLTKWY SPYTQKERSK VIRELSGVIL NRGPKLCNFI EWRGYKVVYK RYASLYFCMC IDEADNELEV LEIIHHYVEI LDRYFGSVCE
101: LDLIFNFHKA YYILDELLIA GELQESSKKT VARIISAQDQ LVEVAKEEAS SISNIIAQAT K
101: LDLIFNFHKA YYILDELLIA GELQESSKKT VARIISAQDQ LVEVAKEEAS SISNIIAQAT K
Arabidopsis Description
AAP19-1AP-1 complex subunit sigma-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LEZ8]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.