Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G003600.1 | Wheat | plastid | 96.72 | 65.45 |
| TraesCS2D01G014900.1 | Wheat | plastid | 97.42 | 65.31 |
| TraesCS2A01G014200.1 | Wheat | plastid | 95.08 | 63.94 |
| HORVU2Hr1G002410.2 | Barley | plastid | 99.77 | 61.83 |
| Os08t0243900-01 | Rice | plasma membrane, plastid | 88.06 | 58.66 |
| EES14778 | Sorghum | plastid | 85.01 | 56.99 |
| Zm00001d024416_P001 | Maize | plasma membrane | 84.78 | 56.83 |
| GSMUA_Achr3P27960_001 | Banana | plastid | 67.68 | 44.12 |
| VIT_11s0052g00920.t01 | Wine grape | mitochondrion | 57.14 | 39.29 |
| KRG90331 | Soybean | endoplasmic reticulum | 56.91 | 38.57 |
| PGSC0003DMT400029685 | Potato | cytosol, plastid | 55.97 | 37.64 |
| KRH02873 | Soybean | endoplasmic reticulum, nucleus | 55.27 | 37.46 |
| Solyc10g078790.1.1 | Tomato | nucleus | 55.27 | 37.17 |
| Bra002727.1-P | Field mustard | plastid | 55.5 | 37.03 |
| AT5G57460.1 | Thale cress | cytosol | 55.74 | 36.84 |
| CDY11868 | Canola | plastid | 55.27 | 36.7 |
| CDX88623 | Canola | plastid | 55.04 | 36.66 |
| Bra006819.1-P | Field mustard | plastid | 55.04 | 36.55 |
| CDY38299 | Canola | plastid | 54.8 | 36.39 |
| CDY25907 | Canola | plastid | 54.57 | 36.12 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G002480.5 | EnsemblPlantsGene:HORVU2Hr1G002480 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 |
| GO:GO:0016020 | InterPro:AP2_Mu_C_sf | InterPro:IPR028565 | InterPro:MHD | InterPro:Muniscin_C | PANTHER:PTHR37769 |
| PFAM:PF10291 | PFscan:PS51072 | SEG:seg | SUPFAM:SSF49447 | UniParc:UPI000B469DEB | UniProt:A0A287GWP9 |
| MapMan:22.1.4.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:-:5161828..5164267
Molecular Weight (calculated)
45535.5 Da
IEP (calculated)
4.946
GRAVY (calculated)
-0.131
Length
427 amino acids
Sequence
(BLAST)
(BLAST)
001: GASFELPQET LAAGDEFSAS SLAPTAAAAT GDEAPPEEAP PIEKDPFAAS DMVVSKPEEE LVGAFKKNKE TALVVADPAA ALAGLEVTSL PPAEATKPTF
101: IGVEGFEGDY GGIEFGNEEA SLAEAFEGFN APFGGGLDAS EFVTTTKKDH KDKTLTGLEL LAMSGGQAPN AASSGSQLDS LLVTPSKDMT VPELCIVEEI
201: NAEFKESVLA RVGLKGTIIL RTLPPKKAAG RETEFSFRLE GTSGMKRAAL QSTVLSSLED GLFHVKTPSK EEPIPIMKYS FLPKHSPLPL RMRLVKRHSG
301: TLLSLMIHYA SNPMLPQPLS NVTFIVKLPV DPTLLNVSPK AVLNRAEREL RWHISDIPLK GPAGRLRARM PVDQDSKDGE LEVVGMVKFA YQGPFTLSGI
401: KLCPAINSTA QFNEVGHTFS SGSYRCI
101: IGVEGFEGDY GGIEFGNEEA SLAEAFEGFN APFGGGLDAS EFVTTTKKDH KDKTLTGLEL LAMSGGQAPN AASSGSQLDS LLVTPSKDMT VPELCIVEEI
201: NAEFKESVLA RVGLKGTIIL RTLPPKKAAG RETEFSFRLE GTSGMKRAAL QSTVLSSLED GLFHVKTPSK EEPIPIMKYS FLPKHSPLPL RMRLVKRHSG
301: TLLSLMIHYA SNPMLPQPLS NVTFIVKLPV DPTLLNVSPK AVLNRAEREL RWHISDIPLK GPAGRLRARM PVDQDSKDGE LEVVGMVKFA YQGPFTLSGI
401: KLCPAINSTA QFNEVGHTFS SGSYRCI
001: MSCLALALQP ANGSDILLQT REWFPPARAL IALSYFRQMR QALASSKQQH QQQSNQKQNQ ASSSSSSSSS VADPDDATAA EFVGDDPLAA SNGQVIVGVE
101: SKYRVVYRLV NSIYILGVTV ADHDNSINVF ECIHIVNQAV SVIVTACRGV EVTPEKLGRK YAEVYMALDI VLRGVSNIRL AAMLGAMHGD GIAKMVHSAL
201: DTENKIRGAD SWMAVESHAA EHQASVNAFS NARFELPPET VAAGDEFAAS LAPVVPESEQ LKEEPEPENK DPFAASETIN KEKELVGGFK KTKDPSSTDL
301: TLALAGLEVT TLPPAEATQS THINVEGFEG QYGGIEFSNE QATIGETFES FSDAWGGGLD PSEFMGPKKI QKKEGLGGLE LLHTSDPKAV EGKDGVNIDN
401: LVKKPEMKGP EMYISEEIRT EFRESLLARV GVMGVIYLKT MPPKGSGEEK ETEFSFRVEG TTAVKRFAMQ SSRISSLGNG LFHVRTAPSE EPIPILKYSL
501: QPKLTPLPLR VRMVKRISGT LLSLMIQYVS NPDLPQPLKN VDFILKLPVD PTLLKVSPKA ILNRTDRELK WQIPEIPLNG SPGRLRARMP IDSDNSEEEP
601: DIICYVKFSV QGNTSLSGIS LRAAAEGNTD FFEVDHRYET GVYMCN
101: SKYRVVYRLV NSIYILGVTV ADHDNSINVF ECIHIVNQAV SVIVTACRGV EVTPEKLGRK YAEVYMALDI VLRGVSNIRL AAMLGAMHGD GIAKMVHSAL
201: DTENKIRGAD SWMAVESHAA EHQASVNAFS NARFELPPET VAAGDEFAAS LAPVVPESEQ LKEEPEPENK DPFAASETIN KEKELVGGFK KTKDPSSTDL
301: TLALAGLEVT TLPPAEATQS THINVEGFEG QYGGIEFSNE QATIGETFES FSDAWGGGLD PSEFMGPKKI QKKEGLGGLE LLHTSDPKAV EGKDGVNIDN
401: LVKKPEMKGP EMYISEEIRT EFRESLLARV GVMGVIYLKT MPPKGSGEEK ETEFSFRVEG TTAVKRFAMQ SSRISSLGNG LFHVRTAPSE EPIPILKYSL
501: QPKLTPLPLR VRMVKRISGT LLSLMIQYVS NPDLPQPLKN VDFILKLPVD PTLLKVSPKA ILNRTDRELK WQIPEIPLNG SPGRLRARMP IDSDNSEEEP
601: DIICYVKFSV QGNTSLSGIS LRAAAEGNTD FFEVDHRYET GVYMCN
Arabidopsis Description
At5g57460 [Source:UniProtKB/TrEMBL;Acc:Q9FKM4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.