Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 6
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400029685 | Potato | cytosol, plastid | 97.32 | 97.32 |
| KRG90331 | Soybean | endoplasmic reticulum | 69.76 | 70.32 |
| KRH02873 | Soybean | endoplasmic reticulum, nucleus | 68.98 | 69.52 |
| VIT_11s0052g00920.t01 | Wine grape | mitochondrion | 67.72 | 69.24 |
| Bra002727.1-P | Field mustard | plastid | 66.61 | 66.09 |
| CDY11868 | Canola | plastid | 66.46 | 65.63 |
| CDX88623 | Canola | plastid | 66.14 | 65.52 |
| CDY38299 | Canola | plastid | 66.3 | 65.47 |
| Bra006819.1-P | Field mustard | plastid | 66.14 | 65.32 |
| AT5G57460.1 | Thale cress | cytosol | 65.83 | 64.71 |
| CDY25907 | Canola | plastid | 65.67 | 64.65 |
| GSMUA_Achr3P27960_001 | Banana | plastid | 60.47 | 58.63 |
| EES14778 | Sorghum | plastid | 56.06 | 55.89 |
| HORVU2Hr1G002480.5 | Barley | cytosol | 37.17 | 55.27 |
| Zm00001d024416_P001 | Maize | plasma membrane | 55.43 | 55.26 |
| Os08t0243900-01 | Rice | plasma membrane, plastid | 55.12 | 54.6 |
| TraesCS2B01G003600.1 | Wheat | plastid | 54.17 | 54.52 |
| TraesCS2A01G014200.1 | Wheat | plastid | 54.49 | 54.49 |
| TraesCS2D01G014900.1 | Wheat | plastid | 54.49 | 54.32 |
| HORVU2Hr1G002410.2 | Barley | plastid | 54.96 | 50.65 |
Protein Annotations
| EnsemblPlants:Solyc10g078790.1.1 | EnsemblPlantsGene:Solyc10g078790.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005886 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0016020 | InterPro:IPR028565 | InterPro:MHD |
| InterPro:Muniscin_C | PANTHER:PTHR37769 | PFAM:PF10291 | PFscan:PS51072 | SEG:seg | UniParc:UPI000276A3E6 |
| UniProt:K4D2C0 | MapMan:22.1.4.2 | : | : | : | : |
Description
No Description!
Coordinates
chr10:+:60491110..60493017
Molecular Weight (calculated)
69054.4 Da
IEP (calculated)
4.690
GRAVY (calculated)
-0.175
Length
635 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCLALSLQP TNGPDILLQT REWFPPSRAL MALSAFRQTR LAFSKQPQQP TAESYPSDPT MSLGDDPLAA SSGQVIVGVE SRYRVVYRLV NSIYVLAITT
101: ADDNDKDMVV NNVFECISIV NQAVSVVVTA CRGVDVTPEK LAKKYAEIYM ALDIVLRGVS NIRLAAMLAS MHGESIAKMV HSAVHTENKI RGGDSWVNVE
201: AHSLEQEGGL ETFSKALFEL PQETLEAGDE VAATLAITGG EKEEEKIEEI EVEQDPFAAS DKINQPESLM GGFKKDKANE SSDVAKALAG LDVTTLPPAA
301: ASQSTHIGVE GFEGEYGGIE FSNEGSTLRE DFEGINDAWG GGLDASEYVG TKKVKKDQGL GGLELLATSE PPKAAAGATA EGAGKNLEDI LVKKMNGPEM
401: FITEEISAEF RESLLARVGL MGIVYLRTLP PKSSDDKETE FSFKVEDTAA VKRFVMQNSR VSSLGNGLFH VKTAPSNEPI PIIKYSLLPR LTPLPLRIRL
501: VKRLSGSLLS VMLQYVANPD IPVPLTDVTF VLKLPVDPTL LKVSPKAVLN RSERELKWHV DEIPLKGHPG KLKARFPIDI NDDDDVVELE LFGYVKFSSQ
601: GTRSLSGISL QPALEGKTDF YEVDHRYSSG VYTCN
101: ADDNDKDMVV NNVFECISIV NQAVSVVVTA CRGVDVTPEK LAKKYAEIYM ALDIVLRGVS NIRLAAMLAS MHGESIAKMV HSAVHTENKI RGGDSWVNVE
201: AHSLEQEGGL ETFSKALFEL PQETLEAGDE VAATLAITGG EKEEEKIEEI EVEQDPFAAS DKINQPESLM GGFKKDKANE SSDVAKALAG LDVTTLPPAA
301: ASQSTHIGVE GFEGEYGGIE FSNEGSTLRE DFEGINDAWG GGLDASEYVG TKKVKKDQGL GGLELLATSE PPKAAAGATA EGAGKNLEDI LVKKMNGPEM
401: FITEEISAEF RESLLARVGL MGIVYLRTLP PKSSDDKETE FSFKVEDTAA VKRFVMQNSR VSSLGNGLFH VKTAPSNEPI PIIKYSLLPR LTPLPLRIRL
501: VKRLSGSLLS VMLQYVANPD IPVPLTDVTF VLKLPVDPTL LKVSPKAVLN RSERELKWHV DEIPLKGHPG KLKARFPIDI NDDDDVVELE LFGYVKFSSQ
601: GTRSLSGISL QPALEGKTDF YEVDHRYSSG VYTCN
001: MSCLALALQP ANGSDILLQT REWFPPARAL IALSYFRQMR QALASSKQQH QQQSNQKQNQ ASSSSSSSSS VADPDDATAA EFVGDDPLAA SNGQVIVGVE
101: SKYRVVYRLV NSIYILGVTV ADHDNSINVF ECIHIVNQAV SVIVTACRGV EVTPEKLGRK YAEVYMALDI VLRGVSNIRL AAMLGAMHGD GIAKMVHSAL
201: DTENKIRGAD SWMAVESHAA EHQASVNAFS NARFELPPET VAAGDEFAAS LAPVVPESEQ LKEEPEPENK DPFAASETIN KEKELVGGFK KTKDPSSTDL
301: TLALAGLEVT TLPPAEATQS THINVEGFEG QYGGIEFSNE QATIGETFES FSDAWGGGLD PSEFMGPKKI QKKEGLGGLE LLHTSDPKAV EGKDGVNIDN
401: LVKKPEMKGP EMYISEEIRT EFRESLLARV GVMGVIYLKT MPPKGSGEEK ETEFSFRVEG TTAVKRFAMQ SSRISSLGNG LFHVRTAPSE EPIPILKYSL
501: QPKLTPLPLR VRMVKRISGT LLSLMIQYVS NPDLPQPLKN VDFILKLPVD PTLLKVSPKA ILNRTDRELK WQIPEIPLNG SPGRLRARMP IDSDNSEEEP
601: DIICYVKFSV QGNTSLSGIS LRAAAEGNTD FFEVDHRYET GVYMCN
101: SKYRVVYRLV NSIYILGVTV ADHDNSINVF ECIHIVNQAV SVIVTACRGV EVTPEKLGRK YAEVYMALDI VLRGVSNIRL AAMLGAMHGD GIAKMVHSAL
201: DTENKIRGAD SWMAVESHAA EHQASVNAFS NARFELPPET VAAGDEFAAS LAPVVPESEQ LKEEPEPENK DPFAASETIN KEKELVGGFK KTKDPSSTDL
301: TLALAGLEVT TLPPAEATQS THINVEGFEG QYGGIEFSNE QATIGETFES FSDAWGGGLD PSEFMGPKKI QKKEGLGGLE LLHTSDPKAV EGKDGVNIDN
401: LVKKPEMKGP EMYISEEIRT EFRESLLARV GVMGVIYLKT MPPKGSGEEK ETEFSFRVEG TTAVKRFAMQ SSRISSLGNG LFHVRTAPSE EPIPILKYSL
501: QPKLTPLPLR VRMVKRISGT LLSLMIQYVS NPDLPQPLKN VDFILKLPVD PTLLKVSPKA ILNRTDRELK WQIPEIPLNG SPGRLRARMP IDSDNSEEEP
601: DIICYVKFSV QGNTSLSGIS LRAAAEGNTD FFEVDHRYET GVYMCN
Arabidopsis Description
At5g57460 [Source:UniProtKB/TrEMBL;Acc:Q9FKM4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.