Factsheet for Solyc05g012340.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
golgi 2
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
unclear: 26455813
nucleus: 28394025
endoplasmic reticulum: 29145071

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072932	Potato	golgi, peroxisome, plastid	90.03	90.78
CDY65417	Canola	cytosol, endoplasmic reticulum, peroxisome	72.58	75.5
VIT_01s0011g00540.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	78.95	75.2
AT2G03510.1	Thale cress	endoplasmic reticulum, peroxisome, plastid	73.68	74.72
KRG89480	Soybean	plastid	73.68	73.68
CDY45557	Canola	endoplasmic reticulum, peroxisome, plastid	72.58	73.18
Bra017383.1-P	Field mustard	cytosol, golgi, peroxisome	73.13	73.13
CDY04155	Canola	endoplasmic reticulum, peroxisome, plastid	73.13	73.13
KRH50516	Soybean	plastid	72.58	71.98
Zm00001d047292_P001	Maize	endoplasmic reticulum, plastid	70.08	68.19
TraesCS4A01G144000.1	Wheat	plastid	68.98	68.03
TraesCS4B01G152900.1	Wheat	plastid	68.98	68.03
TraesCS4D01G154700.1	Wheat	plastid	68.7	67.76
EER92117	Sorghum	plastid	69.53	67.47
GSMUA_Achr4P14350_001	Banana	cytosol	71.47	65.48
HORVU4Hr1G039810.2	Barley	plastid	68.7	63.59
Zm00001d029534_P001	Maize	plastid	69.53	60.63
Os03t0421400-01	Rice	plasma membrane	13.85	38.46

Protein Annotations

MapMan:35.2	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	InterPro:Erlin1/2	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005783	GO:GO:0005789	GO:GO:0005794
GO:GO:0006139	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009056	GO:GO:0009058	GO:GO:0009506	GO:GO:0009987	GO:GO:0015485
GO:GO:0016020	GO:GO:0016021	GO:GO:0019538	GO:GO:0030433	GO:GO:0031625	GO:GO:0032933
UniProt:K4BXV7	PFAM:PF01145	PANTHER:PTHR15351	PANTHER:PTHR15351:SF3	SMART:SM00244	SUPFAM:SSF117892
EnsemblPlantsGene:Solyc05g012340.2	EnsemblPlants:Solyc05g012340.2.1	TMHMM:TMhelix	UniParc:UPI0002765692	SEG:seg	:

Description

No Description!

Coordinates

chr5:-:5601824..5605948

Molecular Weight (calculated)

41082.4 Da

IEP (calculated)

6.728

GRAVY (calculated)

-0.377

Length

361 amino acids

Sequence
(BLAST)

001: MDAQQQQRQQ GVPARPRSGA GRDGGGDFTP ILTVLVAFIS IFALIVAPSI STLNNSVSIL HQVPEGHVGV YWRGGALLNT ITDPGFHLKL PFITQFEPIQ
101: VTLQTDLVRD IPCGTKGGVM INFEKIEVVN RLRKDHVYDT LLNYGVNYDN TWIYDKIHHE INQFCSAHSL QQVYIDMFDQ IDEKMKDALQ ADCTRYAPGI
201: EILSVRITKP SIPESIRRNF ENMEQERTKV LIAVERQRVA EKEAETQKKI AISEAERNAH VSKIQMEQKL MEKDSARKQE EISNSMYLAR EKSLADASYY
301: RTMKEAEANK LKLTPEFLEL RFIEAIANNS KIFFGNKVPN MVLDQRLLGN FLQEPVPRAE S

Best Arabidopsis Sequence Match ( AT2G03510.1 )
(BLAST)

001: MDAQQRRTDI PRAPPVGEPG GDISSILIAF GVFAAIAALV MFPSSLVHQV PEGHVGAYWR GGALLNIITE PGFHLKLPFI TNYEPVQVTL QTDQVRDIPC
101: GTKGGVLITF EKIEVVNRLR KDFVYDTLLN YGVNYDNTWI YDKIHHEINQ FCSSHSLQQV YIDIFDQIDE RMKDALQADC TRYAPGIEIL SVRVTKPKIP
201: ESVRRNFEQM EEERTKVLIA IEKQRVAEKE AETKKIMAIS EAEKNANVSK ILMQQKLTEK DSSRREADIE NQMYLDRQKS LADADYYRVL REAEANKLKL
301: TPEFLELKFI DAIARNTKIF FGDKVPNMVL DQRLLGNFLN HSTKDKDGSL EMATDT

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZQ87]
SUBAcon: [endoplasmic reticulum,plastid,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.