Factsheet for VIT_01s0011g00540.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
mitochondrion 1
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	mitochondrion
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g012340.2.1	Tomato	nucleus	75.2	78.95
PGSC0003DMT400072932	Potato	golgi, peroxisome, plastid	70.71	74.86
AT2G03510.1	Thale cress	endoplasmic reticulum, peroxisome, plastid	69.39	73.88
CDY65417	Canola	cytosol, endoplasmic reticulum, peroxisome	67.55	73.78
KRG89480	Soybean	plastid	69.66	73.13
KRH50516	Soybean	plastid	69.92	72.8
CDY45557	Canola	endoplasmic reticulum, peroxisome, plastid	67.81	71.79
Bra017383.1-P	Field mustard	cytosol, golgi, peroxisome	68.34	71.75
CDY04155	Canola	endoplasmic reticulum, peroxisome, plastid	68.34	71.75
EER92117	Sorghum	plastid	66.49	67.74
Zm00001d047292_P001	Maize	endoplasmic reticulum, plastid	66.23	67.66
TraesCS4B01G152900.1	Wheat	plastid	64.64	66.94
TraesCS4D01G154700.1	Wheat	plastid	64.64	66.94
TraesCS4A01G144000.1	Wheat	plastid	64.12	66.39
GSMUA_Achr4P14350_001	Banana	cytosol	68.34	65.74
HORVU4Hr1G039810.2	Barley	plastid	63.85	62.05
Zm00001d029534_P001	Maize	plastid	66.23	60.63
Os03t0421400-01	Rice	plasma membrane	11.08	32.31

Protein Annotations

EntrezGene:100247350	wikigene:100247350	MapMan:35.2	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	ProteinID:CBI27284
ProteinID:CBI27284.3	UniProt:D7T9W2	InterPro:Erlin1/2	EMBL:FN595752	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005783	GO:GO:0005789	GO:GO:0005794
GO:GO:0006139	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009056	GO:GO:0009058	GO:GO:0009506	GO:GO:0009987	GO:GO:0015485
GO:GO:0016020	GO:GO:0016021	GO:GO:0019538	GO:GO:0030433	GO:GO:0031625	GO:GO:0032933
EntrezGene:LOC100247350	wikigene:LOC100247350	PFAM:PF01145	PANTHER:PTHR15351	PANTHER:PTHR15351:SF3	SMART:SM00244
SUPFAM:SSF117892	TIGR:TC65072	TMHMM:TMhelix	UniParc:UPI000198287E	ArrayExpress:VIT_01s0011g00540	EnsemblPlantsGene:VIT_01s0011g00540
EnsemblPlants:VIT_01s0011g00540.t01	unigene:Vvi.443	RefSeq:XP_002267076	RefSeq:XP_002267076.1	SEG:seg	:

Description

No Description!

Coordinates

chr1:-:506835..513187

Molecular Weight (calculated)

43547.5 Da

IEP (calculated)

5.968

GRAVY (calculated)

-0.433

Length

379 amino acids

Sequence
(BLAST)

001: MDPPQQRPES PMEIPMDQQG RRSETPPPRP RPAPAAAAGG DFSAIITVLF FFILIFSFVA FQSSSTLTNN LTLLHQVPEG HVGMYWRGGA LLKTITEPGF
101: HLKMPLVTQF EPIQVTLQTD QVRDIPCGTK GGVMINFEKI EVVNRLHKDY VYETLLNYGV QYDNTWIYDK IHHEINQFCS AHSLQQVYID MFDQIDEKMK
201: DALQGDCTRY APGIEIISVR VTKPSIPESI RRNFEQMEQE RTNVLIAMEK QKVAEKEAET RKKMAITEAE KNAQVSKILM QQKLMEKDSS RMQEEIENQM
301: YMAREKSLAD ASFYRLMKEA EANKLKLTPE YLELRFIEAI ANNSKIFFGN KVPNMVFDQR LLGNFLQSVA KRGDTEAEF

Best Arabidopsis Sequence Match ( AT2G03510.1 )
(BLAST)

001: MDAQQRRTDI PRAPPVGEPG GDISSILIAF GVFAAIAALV MFPSSLVHQV PEGHVGAYWR GGALLNIITE PGFHLKLPFI TNYEPVQVTL QTDQVRDIPC
101: GTKGGVLITF EKIEVVNRLR KDFVYDTLLN YGVNYDNTWI YDKIHHEINQ FCSSHSLQQV YIDIFDQIDE RMKDALQADC TRYAPGIEIL SVRVTKPKIP
201: ESVRRNFEQM EEERTKVLIA IEKQRVAEKE AETKKIMAIS EAEKNANVSK ILMQQKLTEK DSSRREADIE NQMYLDRQKS LADADYYRVL REAEANKLKL
301: TPEFLELKFI DAIARNTKIF FGDKVPNMVL DQRLLGNFLN HSTKDKDGSL EMATDT

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZQ87]
SUBAcon: [endoplasmic reticulum,plastid,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.