Factsheet for PGSC0003DMT400072932

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, plastid

Predictor Summary:

nucleus 1
golgi 1
mitochondrion 2
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g012340.2.1	Tomato	nucleus	90.78	90.03
AT2G03510.1	Thale cress	endoplasmic reticulum, peroxisome, plastid	71.79	72.19
CDY65417	Canola	cytosol, endoplasmic reticulum, peroxisome	69.27	71.47
CDY45557	Canola	endoplasmic reticulum, peroxisome, plastid	70.95	70.95
Bra017383.1-P	Field mustard	cytosol, golgi, peroxisome	71.51	70.91
CDY04155	Canola	endoplasmic reticulum, peroxisome, plastid	71.51	70.91
KRG89480	Soybean	plastid	71.51	70.91
VIT_01s0011g00540.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	74.86	70.71
KRH50516	Soybean	plastid	70.67	69.51
TraesCS4A01G144000.1	Wheat	plastid	67.32	65.85
TraesCS4B01G152900.1	Wheat	plastid	67.32	65.85
TraesCS4D01G154700.1	Wheat	plastid	67.32	65.85
Zm00001d047292_P001	Maize	endoplasmic reticulum, plastid	67.6	65.23
EER92117	Sorghum	plastid	67.32	64.78
GSMUA_Achr4P14350_001	Banana	cytosol	69.27	62.94
HORVU4Hr1G039810.2	Barley	plastid	67.32	61.79
Zm00001d029534_P001	Maize	plastid	67.04	57.97
Os03t0421400-01	Rice	plasma membrane	13.13	36.15

Protein Annotations

EntrezGene:102598385	MapMan:35.2	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	InterPro:Erlin1/2	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005783	GO:GO:0005794
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009506	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0019538	GO:GO:0030433	GO:GO:0031625	UniProt:M1CR81
PFAM:PF01145	EnsemblPlantsGene:PGSC0003DMG400028375	PGSC:PGSC0003DMG400028375	EnsemblPlants:PGSC0003DMT400072932	PANTHER:PTHR15351	PANTHER:PTHR15351:SF3
SMART:SM00244	SUPFAM:SSF117892	TMHMM:TMhelix	UniParc:UPI0002956339	SEG:seg	:

Description

SPFH domain-containing protein 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400028375]

Coordinates

chr5:+:494570..498576

Molecular Weight (calculated)

40716.1 Da

IEP (calculated)

7.283

GRAVY (calculated)

-0.272

Length

358 amino acids

Sequence
(BLAST)

001: MDAQQQQRQQ GVPARPRSGD GGGDFTPILT VLVAFIAIFA LIVAPSISTL NNSVSILHQV PEGHVGVYWR GGALLNTITD PGFHMKLPFI TQFEPIQVTL
101: QTDLVRDIPC GTKGGVMINF EKVEVVNRLR KDHVYDTLLN YGVNYDNTWI YDKIHHEINQ FCSAHSLQQV YIDMFDQIDE KMKDALQADC TRYAPGIEIL
201: SVRITKPSIP ESIRRNFENM EQERTKVLIA VERQRVAEKE AETQKKIAIS EAERNAHVSK IQMEQKLMEK DSARKQEEIS NSMYLAREKS LADASYYRTM
301: KEAEANKLKL TPEFLELRFI EAIANNSKIF FGNKARLIFL LHLSPSPLLS LRLTAFCA

Best Arabidopsis Sequence Match ( AT2G03510.1 )
(BLAST)

001: MDAQQRRTDI PRAPPVGEPG GDISSILIAF GVFAAIAALV MFPSSLVHQV PEGHVGAYWR GGALLNIITE PGFHLKLPFI TNYEPVQVTL QTDQVRDIPC
101: GTKGGVLITF EKIEVVNRLR KDFVYDTLLN YGVNYDNTWI YDKIHHEINQ FCSSHSLQQV YIDIFDQIDE RMKDALQADC TRYAPGIEIL SVRVTKPKIP
201: ESVRRNFEQM EEERTKVLIA IEKQRVAEKE AETKKIMAIS EAEKNANVSK ILMQQKLTEK DSSRREADIE NQMYLDRQKS LADADYYRVL REAEANKLKL
301: TPEFLELKFI DAIARNTKIF FGDKVPNMVL DQRLLGNFLN HSTKDKDGSL EMATDT

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZQ87]
SUBAcon: [endoplasmic reticulum,plastid,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.