Factsheet for TraesCS4A01G144000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
endoplasmic reticulum 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G154700.1	Wheat	plastid	98.36	98.36
TraesCS4B01G152900.1	Wheat	plastid	98.36	98.36
HORVU4Hr1G039810.2	Barley	plastid	98.36	92.31
EER92117	Sorghum	plastid	82.24	80.91
Zm00001d047292_P001	Maize	endoplasmic reticulum, plastid	81.15	80.05
Zm00001d029534_P001	Maize	plastid	81.69	72.22
CDY65417	Canola	cytosol, endoplasmic reticulum, peroxisome	65.57	69.16
Solyc05g012340.2.1	Tomato	nucleus	68.03	68.98
PGSC0003DMT400072932	Potato	golgi, peroxisome, plastid	65.85	67.32
KRG89480	Soybean	plastid	66.12	67.04
KRH50516	Soybean	plastid	66.12	66.48
AT2G03510.1	Thale cress	endoplasmic reticulum, peroxisome, plastid	64.48	66.29
CDY45557	Canola	endoplasmic reticulum, peroxisome, plastid	64.75	66.2
GSMUA_Achr4P14350_001	Banana	cytosol	71.04	65.99
CDY04155	Canola	endoplasmic reticulum, peroxisome, plastid	65.03	65.93
Bra017383.1-P	Field mustard	cytosol, golgi, peroxisome	65.03	65.93
VIT_01s0011g00540.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	66.39	64.12
Os03t0421400-01	Rice	plasma membrane	18.85	53.08

Protein Annotations

MapMan:35.2	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	InterPro:Erlin1/2	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005783	GO:GO:0005794	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009506	GO:GO:0009987	GO:GO:0016020
GO:GO:0019538	GO:GO:0030433	GO:GO:0031625	PFAM:PF01145	PANTHER:PTHR15351	PANTHER:PTHR15351:SF3
SMART:SM00244	SUPFAM:SSF117892	EnsemblPlantsGene:TraesCS4A01G144000	EnsemblPlants:TraesCS4A01G144000.1	TIGR:cd03406	SEG:seg

Description

No Description!

Coordinates

chr4A:+:240361935..240375510

Molecular Weight (calculated)

41743.5 Da

IEP (calculated)

7.236

GRAVY (calculated)

-0.364

Length

366 amino acids

Sequence
(BLAST)

001: MSDVTAESTP RQRLPTPSPS LSQQQSRGRQ PPPPGSDPLA LGVVIFIAVC FLLVSISAPS SILHQVPEGH VGVYWRGGAL LKTITTPGYH LKLPFITQFE
101: PIQVTLQTDQ VKGIPCGTKG GVMISFDKIE VVNRLNKDFV YDTLLNYGVH YDKTWIYDKI HHEINQFCSA HTLQQVYIDM FDQIDETMKE AIQRDCTRYA
201: PGIEIISVRV TKPNIPVSIR RNFELMEEER TKPLIAIERQ KVAEKEAETQ KKIALSEAEK NALVSKILMQ QMLTEKDSSK RQQQIDNEMF LARERALADA
301: NYYRITKEAE ANKLKLTPEY LELRFIESIA NNTKIFFGEK IPNMIMDQRL IRNHLDSAPS KDQLEI

Best Arabidopsis Sequence Match ( AT2G03510.1 )
(BLAST)

001: MDAQQRRTDI PRAPPVGEPG GDISSILIAF GVFAAIAALV MFPSSLVHQV PEGHVGAYWR GGALLNIITE PGFHLKLPFI TNYEPVQVTL QTDQVRDIPC
101: GTKGGVLITF EKIEVVNRLR KDFVYDTLLN YGVNYDNTWI YDKIHHEINQ FCSSHSLQQV YIDIFDQIDE RMKDALQADC TRYAPGIEIL SVRVTKPKIP
201: ESVRRNFEQM EEERTKVLIA IEKQRVAEKE AETKKIMAIS EAEKNANVSK ILMQQKLTEK DSSRREADIE NQMYLDRQKS LADADYYRVL REAEANKLKL
301: TPEFLELKFI DAIARNTKIF FGDKVPNMVL DQRLLGNFLN HSTKDKDGSL EMATDT

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZQ87]
SUBAcon: [endoplasmic reticulum,plastid,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.