Factsheet for Solyc06g074650.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g032050.2.1
Solyc03g096000.2.1	plasma membrane
Solyc04g081410.2.1	golgi
Solyc05g052510.2.1	plasma membrane
Solyc06g051310.2.1	plasma membrane
Solyc07g049380.1.1
Solyc08g081320.2.1
Solyc10g078790.1.1
Solyc11g068640.1.1
Solyc12g006000.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G22770.1	Solyc04g081410.2.1	AT1G47830.1	23975899
AT5G22770.1	Solyc04g081410.2.1	AT1G47830.1	23975899
AT5G22770.1	Solyc11g068640.1.1	AT3G01780.1	24529374
AT5G22770.1	Solyc03g096000.2.1	AT3G11130.1	23975898
AT5G22770.1	Solyc05g052510.2.1	AT3G11130.1	23975898
AT5G22770.1	Solyc06g051310.2.1	AT3G11130.1	23975898
AT5G22770.1	Solyc08g081320.2.1	AT4G23460.1	23975899
AT5G22770.1	Solyc10g078790.1.1	AT5G57460.1	24529374
AT5G22770.1	Solyc03g032050.2.1	AT5G65960.1	23975899
AT5G22780.1	Solyc07g049380.1.1	AT1G05020.1	15054111
AT5G22780.1	Solyc12g006000.1.1	AT1G05020.1	15054111

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g066760.1.1	Tomato	cytosol	43.56	94.86
Os03t0112101-00	Rice	plasma membrane	35.3	92.05
GSMUA_Achr5P15260_001	Banana	cytosol	11.8	91.6
CDY20343	Canola	cytosol	27.93	91.03
VIT_06s0061g01170.t01	Wine grape	cytosol	87.51	87.68
KRH22743	Soybean	cytosol, endoplasmic reticulum	85.94	85.69
KRH26563	Soybean	endoplasmic reticulum	85.55	85.29
AT5G22770.1	Thale cress	cytosol	80.63	81.03
CDY26951	Canola	cytosol	80.24	80.95
Bra002427.1-P	Field mustard	cytosol	80.14	80.93
CDX92339	Canola	cytosol	80.14	80.93
GSMUA_Achr1P01770_001	Banana	cytosol	81.51	80.88
AT5G22780.1	Thale cress	cytosol	80.43	80.75
Bra037603.1-P	Field mustard	cytosol	80.14	80.37
Solyc11g066770.1.1	Tomato	cytosol	33.73	79.03
KXG40365	Sorghum	cytosol	78.37	76.34
CDY29719	Canola	cytosol	73.35	76.04
TraesCS4B01G395700.3	Wheat	cytosol, unclear	75.71	73.97
Zm00001d027333_P018	Maize	cytosol	77.58	73.88
TraesCS5A01G557300.1	Wheat	cytosol	75.42	73.61
Zm00001d048511_P008	Maize	cytosol	76.99	73.52
CDY20344	Canola	cytosol	46.12	72.71
HORVU4Hr1G089310.1	Barley	cytosol	74.14	71.0
GSMUA_Achr5P15250_001	Banana	cytosol	67.06	68.68
Os03t0112400-01	Rice	cytosol	9.44	62.75
Solyc04g025870.2.1	Tomato	plastid	22.42	26.0
Solyc05g005780.2.1	Tomato	nucleus	22.42	25.94
Solyc08g075310.2.1	Tomato	cytosol	17.4	18.29
Solyc03g119270.1.1	Tomato	nucleus	15.54	16.29

Protein Annotations

Gene3D:1.25.10.10	Gene3D:2.60.40.1230	MapMan:22.1.3.1	Gene3D:3.30.310.10	InterPro:AP2_complex_asu	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Clathrin/coatomer_adapt-like_N	InterPro:Clathrin_a-adaptin_app_sub_C	InterPro:Clathrin_a/b/g-adaptin_app_Ig	InterPro:Clathrin_app_Ig-like_sf	InterPro:Coatomer/calthrin_app_sub_C
GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005905	GO:GO:0006810	GO:GO:0006886	GO:GO:0006897
GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117
GO:GO:0030131	GO:GO:0035615	GO:GO:0072583	InterPro:IPR011989	InterPro:IPR012295	UniProt:K4C9I3
PFAM:PF01602	PFAM:PF02296	PFAM:PF02883	PIRSF:PIRSF037091	PANTHER:PTHR22780	PANTHER:PTHR22780:SF4
SMART:SM00809	SUPFAM:SSF48371	SUPFAM:SSF49348	SUPFAM:SSF55711	EnsemblPlantsGene:Solyc06g074650.2	EnsemblPlants:Solyc06g074650.2.1
InterPro:TBP_dom_sf	UniParc:UPI00027665BB	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:-:46190460..46204185

Molecular Weight (calculated)

113373.0 Da

IEP (calculated)

6.060

GRAVY (calculated)

-0.072

Length

1017 amino acids

Sequence
(BLAST)

0001: MALSGMRGLS VFISDIRNCQ NKEQERLRVD KELGNVRTRF KNEKGLTPYE KKKYVWKMLY IYMLGYDVDF GHMEAVSLIS APKYPEKQVG YIVTSCLLNE
0101: NHDFLRLAIN TVRNDIIGRN ETFQCLALTL VGNIGGREFA ESLAPDVQKL LISSSCRPLV RKKAALCLLR LFRKNPDVVN VDGWSDRMAQ LLDERDFGVL
0201: TSCMSLLVAL VASNHEAYWS CLPKCVKVLE RLARNQDIPQ EYTYYGIPSP WLQVKTMRSL QYFPTIEDPS TRRSLFEVLQ RILMGTDVVK NVNKNNASHA
0301: VLFEALALVM HLDAEKEMMS QCVALLGKFI AVREPNIRYL GLENMTRMLM VTDVQDIIKR HQAQIITSLK DPDISIRRRA LDLLYGMCDV SNAKDIVEEL
0401: LQYLSTAEFV MREELSLKIA ILAEKFAPDL SWYVDVILQL IDKAGDFVSD DIWFRVVQFV TNNEDLQPYA ALKSREYLDK PAIHETMVKV SSYILGEYSH
0501: LLARRPGCSP KEIFSLIHEK LPTVSTSTIP ILLSTYAKIL MHTQPPDPEL QNQILAIFRK YESCIDAEIQ QRAVEYLELS KKGAALMDVL AEMPKFPERQ
0601: SSLIKKAEDT EADTAEQSAI RLRTQQQTSN ALAVTDQPSA NGTPPVSHLG LVKVPSMTNA DRNLADQRAS EPDGTLTVVD PQPPSVPSPD VLGDLLGPLA
0701: IEGPQPAATQ PAHNLSSGVG IAPNAEDALA LAPIEEQTAT VQPIGNIAER FQALVLKDSG ILYEDPYIQI GTKAEWRAHH GRLVLFLGNK NTAPLVSVQA
0801: LILPPSHLRI ELSLVPETIP PRAQVQCPLE VVNLRPSRDV AVLDFSYNFG AQLVNVKLRL PAILNKFLQP ITVSAEEFFP QWRSLSGPPL KLQEVVRGVR
0901: PMSLLEMTNL FNSLRLMVCP GLDPNANNLV ASTTFYSDST RAMLCLVRIE TDPADRTQLR MTVASGDPTL TFELKEFIKE QLIIIPTAAT AAAQPVPQPT
1001: SSSPPVSDPG ALLAGLL

Best Arabidopsis Sequence Match ( AT5G22770.3 )
(BLAST)

0001: MTGMRGLSVF ISDVRNCQNK EAERLRVDKE LGNIRTCFKN EKVLTPYKKK KYVWKMLYIH MLGYDVDFGH MEAVSLISAP KYPEKQVGYI VTSCLLNENH
0101: DFLKLAINTV RNDIIGRNET FQCLALTLVG NIGGRDFAES LAPDVQKLLI SSSCRPLVRK KAALCLLRLF RKNPDAVNVD GWADRMAQLL DERDLGVLTS
0201: STSLLVALVS NNHEAYSSCL PKCVKILERL ARNQDVPQEY TYYGIPSPWL QVKAMRALQY FPTIEDPSTR KALFEVLQRI LMGTDVVKNV NKNNASHAVL
0301: FEALSLVMHL DAEKEMMSQC VALLGKFISV REPNIRYLGL ENMTRMLMVT DVQDIIKKHQ SQIITSLKDP DISIRRRALD LLYGMCDVSN AKDIVEELLQ
0401: YLSTAEFSMR EELSLKAAIL AEKFAPDLSW YVDVILQLID KAGDFVSDDI WFRVVQFVTN NEDLQPYAAS KAREYLDKIA IHETMVKVSA YILGEYGHLL
0501: ARQPGCSASE LFSILHEKLP TISTPTIPIL LSTYAKLLMH AQPPDPELQK KVWAVFKKYE SCIDVEIQQR AVEYFELSKK GPAFMDVLAE MPKFPERQSS
0601: LIKKAENVED TADQSAIKLR AQQQPSNAMV LADQQPVNGA PPPLKVPILS GSTDPESVAR SLSHPNGTLS NIDPQTPSPD LLSDLLGPLA IEAPPGAVSN
0701: EQHGPVGAEG VPDEVDGSAI VPVEEQTNTV ELIGNIAERF HALCLKDSGV LYEDPHIQIG IKAEWRGHHG RLVLFMGNKN TSPLTSVQAL ILPPAHLRLD
0801: LSPVPDTIPP RAQVQSPLEV MNIRPSRDVA VLDFSYKFGA NVVSAKLRIP ATLNKFLQPL QLTSEEFFPQ WRAISGPPLK LQEVVRGVRP LALPEMANLF
0901: NSFHVTICPG LDPNPNNLVA STTFYSESTG AILCLARIET DPADRTQLRM TVGTGDPTLT FELKEFIKEQ LITVPMGSRA LVPAAGPAPP VAQPPSPAAL
1001: ADDPGAMLAG LL

Arabidopsis Description

ALPHA-ADRAP-2 complex subunit alpha-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPL6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.