Factsheet for Solyc12g006000.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g107610.2.1
Solyc06g074650.2.1
Solyc11g066760.1.1
Solyc11g066770.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05020.1	Solyc01g107610.2.1	AT2G15270.1	21798944
AT1G05020.1	Solyc06g074650.2.1	AT5G22780.1	15054111
AT1G05020.1	Solyc11g066760.1.1	AT5G22780.1	15054111
AT1G05020.1	Solyc11g066770.1.1	AT5G22780.1	15054111

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036091	Potato	cytosol	96.98	97.25
Solyc07g049380.1.1	Tomato	cytosol	61.13	59.89
VIT_12s0059g01330.t01	Wine grape	cytosol	48.08	59.22
CDY18283	Canola	cytosol, nucleus, peroxisome	38.19	57.92
CDY53396	Canola	cytosol	43.96	53.78
CDY15531	Canola	cytosol, golgi, nucleus	43.96	52.46
AT1G05020.1	Thale cress	cytosol	46.98	52.37
Bra015381.1-P	Field mustard	cytosol	45.33	51.81
Bra030600.1-P	Field mustard	cytosol, golgi, nucleus	41.9	47.29
CDX86594	Canola	cytosol, golgi, nucleus	41.76	46.77
KRH17907	Soybean	cytosol	42.03	41.92
GSMUA_Achr2P18700_001	Banana	cytosol	26.51	38.52
Solyc12g017440.1.1	Tomato	cytosol	14.56	35.45
GSMUA_Achr7P02300_001	Banana	plastid	24.45	35.25
Solyc01g104870.2.1	Tomato	cytosol, mitochondrion	24.86	31.15
Solyc08g059660.1.1	Tomato	cytosol	26.37	30.19
Solyc06g011450.1.1	Tomato	cytosol	24.59	29.15
Solyc07g008060.1.1	Tomato	cytosol	23.9	28.34
Solyc01g005170.1.1	Tomato	cytosol, mitochondrion, plastid	14.29	25.12
Solyc11g044860.1.1	Tomato	cytosol	17.17	25.0
Solyc02g043810.2.1	Tomato	cytosol	19.51	24.57
Solyc04g007860.2.1	Tomato	cytosol, plastid	18.82	24.33
Solyc07g007820.2.1	Tomato	cytosol	18.41	23.8
Solyc01g005070.2.1	Tomato	mitochondrion	12.91	23.62
Solyc04g008350.1.1	Tomato	mitochondrion	11.95	22.14
Solyc12g010530.1.1	Tomato	cytosol	17.45	21.38
Solyc12g017430.1.1	Tomato	nucleus	4.12	14.15

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.6.1	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2	InterPro:ENTH
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	InterPro:IPR008942
InterPro:IPR013809	InterPro:IPR014712	UniProt:K4DBD8	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951
PANTHER:PTHR22951:SF26	SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	EnsemblPlantsGene:Solyc12g006000.1	EnsemblPlants:Solyc12g006000.1.1
UniParc:UPI000276A628	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:+:616051..618237

Molecular Weight (calculated)

81265.5 Da

IEP (calculated)

5.509

GRAVY (calculated)

-0.551

Length

728 amino acids

Sequence
(BLAST)

001: MPSKLKKAIG AVKDQTSISL AKVSSNTSST LEVAVLKATT HDDVPIDDRY VQEVIKLVSS NKAYAAACAR AIGKRIGRTR NWIVALKSLM LVLRIFQDGD
101: PYFPREILHA MKRGAKILNL SSFRDDSNSS PWDFTAFVRT FALYLDERLD CFLTGKLQRR YNNRDRENSS IHNYRSTGSS RRRGDEPVRD MKPVMLLDKI
201: SYWQRLIERA IATRPTGAAK TNRLVQIALY AVVTESFDLY KDISDGLALV LDSFFHLPYQ SCVNAFQTCV KAAKQFEEIS VFYSVCKTIG VGRTSEYPSV
301: QTISEELIET LQEFLKDQSS FPAHTQSKPH LLLPGTGGGS TRTTSSKRDS YGCQSDFSMT TGTTEPYSEK SANTCGDSRC TSLEDLISAT ETWKSPANIS
401: IDLEAYSDIQ FEKQLHEKDE SGSTHSLPVS NSMADLVSLP DLHEYDEDDE KKQEAQLEQH HKQNPSLDSI SSAKGWELVL TEAIPSTSFN AFPEQPKPDH
501: LSRNETRGVI TPSASFNAFP EQGQVNVPTN EEEVSSSNGW ELVLFENIPQ AQSTQPVVPS TTNNNNVNSF SFATLDDLYN QNQTPFYPNN SQNSHFNHST
601: NNFLYDQTPA PQHYNPFLQD TSMELAMVPV TSAPAPYPTL TTNSSFSFPT STDMFTSSAP APTFQATPTF SAQNHTTGPM QGTNMDDPFA TFSSSDQMFN
701: GIKNEQNLMQ EQQLWLQNQN KIIAKHRA

Best Arabidopsis Sequence Match ( AT1G05020.1 )
(BLAST)

001: MPSKLKKAIG AVKDQTSISL AKVANGATGG GDLTTLEVAI LKATSHDEEV PIDDRLVTEI LGIISSKKSH AASCAAAIGR RIGRTRNWIV ALKSLVLVLR
101: IFQDGDPYFP REVLHAMKRG AKILNLSSFR DDSNSCPWDF TAFVRTFALY LDERLDCFLT GKLQRRYTNR EQTGRISTNS TTRSRFNPKA GIKSHEPAVR
201: DMKPVMLLDK ITYWQKLLDR AIATRPTGDA KANRLVKMSL YAVMQESFDL YRDISDGLAL LLDSFFHLQY QSCINAFQAC VRASKQFEEL NAFYDLSKSI
301: GIGRTSEYPS IQKISLELLE TLQEFLKDQS SFPASSGLYP SPNSFLPPPP SSKDSAVSSS LDFGDSTIDT SERYSDYGSF RSTSLEDLMS RTEAGTSSPP
401: MSCHSEPYGG GRDDPNGNNF DTVSTKSLPN NPSVSASNLI LDLLSLDDVS NTAEAEDVED KKKQDDSKAE TFDPWEALML RDDPKKKIET IEEEPSTAED
501: HQRDSGNWLL ALEETATQVQ GNNSMAIVPF GLDDPMPAFQ AATDQYNPFL EEPVAQLATA GEPMITFGGL ALTGFQPEPT FQVNVPDDFE PSSTPTFKAT
601: ETLPMKCDPF TTFESFGFGE TFSENGGVNQ QSVLQEQQIW LQNQKKIIAK HLS

Arabidopsis Description

AP180Clathrin coat assembly protein AP180 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVN6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.