Factsheet for GSMUA_Achr2P18700_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
golgi 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P01770_001
GSMUA_Achr1P26130_001
GSMUA_Achr3P13080_001
GSMUA_Achr5P15250_001
GSMUA_Achr5P15260_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05020.1	GSMUA_Achr1P26130_001	AT2G15270.1	21798944
AT1G05020.1	GSMUA_Achr3P13080_001	AT2G15270.1	21798944
AT1G05020.1	GSMUA_Achr1P01770_001	AT5G22780.1	15054111
AT1G05020.1	GSMUA_Achr5P15250_001	AT5G22780.1	15054111
AT1G05020.1	GSMUA_Achr5P15260_001	AT5G22780.1	15054111

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P02300_001	Banana	plastid	63.07	62.57
CDY18283	Canola	cytosol, nucleus, peroxisome	34.53	36.04
VIT_12s0059g01330.t01	Wine grape	cytosol	40.32	34.18
CDY53396	Canola	cytosol	39.32	33.11
CDY15531	Canola	cytosol, golgi, nucleus	37.72	30.98
Bra015381.1-P	Field mustard	cytosol	39.32	30.93
AT1G05020.1	Thale cress	cytosol	40.12	30.78
GSMUA_Achr10P...	Banana	mitochondrion	30.54	30.3
GSMUA_Achr9P03950_001	Banana	cytosol, mitochondrion, plastid	30.74	29.22
GSMUA_Achr6P18600_001	Banana	cytosol, mitochondrion	30.74	29.0
GSMUA_Achr11P...	Banana	cytosol	25.95	28.51
CDX86594	Canola	cytosol, golgi, nucleus	36.13	27.85
Bra030600.1-P	Field mustard	cytosol, golgi, nucleus	35.73	27.75
GSMUA_Achr11P...	Banana	cytosol	28.14	27.12
PGSC0003DMT400036091	Potato	cytosol	38.72	26.72
Solyc12g006000.1.1	Tomato	cytosol	38.52	26.51
Solyc07g049380.1.1	Tomato	cytosol	38.12	25.71
KRH17907	Soybean	cytosol	37.13	25.48
PGSC0003DMT400001773	Potato	nucleus	37.72	25.1
GSMUA_Achr6P33420_001	Banana	cytosol, mitochondrion, plastid	30.94	24.53
GSMUA_Achr4P13420_001	Banana	cytosol	23.55	22.1
GSMUA_Achr4P20660_001	Banana	cytosol	24.55	22.08
GSMUA_Achr1P15690_001	Banana	cytosol	24.35	21.82
GSMUA_Achr7P04960_001	Banana	cytosol	23.95	21.82
GSMUA_Achr9P21890_001	Banana	cytosol	23.95	21.43
GSMUA_Achr4P05920_001	Banana	cytosol	23.15	21.17
GSMUA_Achr5P23570_001	Banana	cytosol	22.55	20.73
GSMUA_Achr3P05590_001	Banana	cytosol	22.55	20.7
GSMUA_Achr7P18620_001	Banana	mitochondrion	15.97	20.62
GSMUA_Achr6P03060_001	Banana	cytosol	22.16	20.29
GSMUA_Achr3P20230_001	Banana	mitochondrion	13.37	20.24
GSMUA_Achr7P02390_001	Banana	cytosol	16.77	20.19
GSMUA_Achr8P22890_001	Banana	mitochondrion	15.57	19.65

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:35.1	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2	InterPro:ENTH
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	EnsemblPlantsGene:GSMUA_Achr2G18700_001
EnsemblPlants:GSMUA_Achr2P18700_001	EnsemblPlants:GSMUA_Achr2T18700_001	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	UniProt:M0S961
PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF26	SMART:SM00273	SUPFAM:SSF48464
SUPFAM:SSF89009	UniParc:UPI000295DFED	SEG:seg	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G18700_001]

Coordinates

chr2:+:19024476..19025981

Molecular Weight (calculated)

56800.3 Da

IEP (calculated)

10.515

GRAVY (calculated)

-0.398

Length

501 amino acids

Sequence
(BLAST)

001: MPSVLRLAIG AIKDQTSIGI AKFSKRSANL EVAVLKVTSH DEVPIEERHL TEVLLLSASC PSSAATCVRI LSRRISRTSN WVVALKTLVL VFRLLRSGRS
101: QFIHEALAAP QGSRRRRRLL DLSSFRDHSA TSSPWDYTAF VRTFAVYLDA RLHSALLGKL SNLRSRRPLT AANLFANMKT PLILEHIEHW QRLLDRAIGT
201: RPTGPAKVNR LIQIALYVVV CETFSLYHDI SHGLSRLLDN FFHLQPESRL KTFQACMKAR KQFEELESFH DFCRKIGVGR MSEYPRVQQI SATLLGALEE
301: FLKNRPSSLA TSPNAKPKSF PSLHPTALER EQEDTTTARR PPTMSERESV ASRHKDWQLQ PISSSVNINI GGNHQHTDTD SEGWEILLVR SLNGMSNEAG
401: VIDPPAQSLL DRRVADRAED LQNPFLSDHD NRSRAMIPPP TFCARKLNAE QAYQEMDPFN EAATGAYSLR SDGLMRQRRV LREQHMWMQQ QSKIMAKRLT
501: R

Best Arabidopsis Sequence Match ( AT1G05020.1 )
(BLAST)

001: MPSKLKKAIG AVKDQTSISL AKVANGATGG GDLTTLEVAI LKATSHDEEV PIDDRLVTEI LGIISSKKSH AASCAAAIGR RIGRTRNWIV ALKSLVLVLR
101: IFQDGDPYFP REVLHAMKRG AKILNLSSFR DDSNSCPWDF TAFVRTFALY LDERLDCFLT GKLQRRYTNR EQTGRISTNS TTRSRFNPKA GIKSHEPAVR
201: DMKPVMLLDK ITYWQKLLDR AIATRPTGDA KANRLVKMSL YAVMQESFDL YRDISDGLAL LLDSFFHLQY QSCINAFQAC VRASKQFEEL NAFYDLSKSI
301: GIGRTSEYPS IQKISLELLE TLQEFLKDQS SFPASSGLYP SPNSFLPPPP SSKDSAVSSS LDFGDSTIDT SERYSDYGSF RSTSLEDLMS RTEAGTSSPP
401: MSCHSEPYGG GRDDPNGNNF DTVSTKSLPN NPSVSASNLI LDLLSLDDVS NTAEAEDVED KKKQDDSKAE TFDPWEALML RDDPKKKIET IEEEPSTAED
501: HQRDSGNWLL ALEETATQVQ GNNSMAIVPF GLDDPMPAFQ AATDQYNPFL EEPVAQLATA GEPMITFGGL ALTGFQPEPT FQVNVPDDFE PSSTPTFKAT
601: ETLPMKCDPF TTFESFGFGE TFSENGGVNQ QSVLQEQQIW LQNQKKIIAK HLS

Arabidopsis Description

AP180Clathrin coat assembly protein AP180 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVN6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.