Factsheet for GSMUA_Achr11P24410_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05593	Soybean	cytosol	11.18	59.3
GSMUA_Achr9P03950_001	Banana	cytosol, mitochondrion, plastid	65.35	56.55
GSMUA_Achr6P33420_001	Banana	cytosol, mitochondrion, plastid	67.54	48.73
Zm00001d046121_P001	Maize	cytosol	38.38	48.21
TraesCS4D01G208100.1	Wheat	cytosol, mitochondrion, plastid	57.46	46.79
CDY35361	Canola	cytosol	58.99	45.52
CDX76976	Canola	cytosol	58.99	45.36
Zm00001d028620_P001	Maize	plasma membrane	63.38	45.23
EER92480	Sorghum	cytosol, mitochondrion, plastid	63.82	45.12
CDX75232	Canola	cytosol	58.11	44.69
TraesCS4B01G207200.1	Wheat	cytosol, mitochondrion, plastid	62.5	44.67
Zm00001d047804_P001	Maize	plasma membrane	62.06	44.64
CDX68831	Canola	cytosol	57.68	44.5
Zm00001d030399_P001	Maize	cytosol	33.99	44.29
Os03t0275500-01	Rice	plasma membrane	63.16	44.24
TraesCS4A01G097200.1	Wheat	cytosol, mitochondrion, plastid	61.84	44.2
HORVU4Hr1G059660.3	Barley	cytosol, mitochondrion, plastid	62.06	43.81
CDY11530	Canola	cytosol	55.7	43.79
Bra011333.1-P	Field mustard	cytosol	60.09	43.7
PGSC0003DMT400035762	Potato	cytosol	60.96	43.51
KRH52429	Soybean	endoplasmic reticulum	60.96	43.37
Solyc08g059660.1.1	Tomato	cytosol	60.09	43.08
AT2G25430.1	Thale cress	cytosol	61.62	43.03
Bra034252.1-P	Field mustard	cytosol	60.96	42.84
KRH61760	Soybean	mitochondrion	61.18	42.79
Bra007800.1-P	Field mustard	cytosol	57.46	42.74
PGSC0003DMT400040963	Potato	cytosol	59.87	42.59
VIT_04s0008g05540.t01	Wine grape	cytosol	61.62	42.38
AT4G32285.2	Thale cress	cytosol	58.33	41.89
VIT_11s0016g05480.t01	Wine grape	cytosol	57.68	41.55
Solyc06g011450.1.1	Tomato	cytosol	55.48	41.21
PGSC0003DMT400079380	Potato	cytosol, mitochondrion, plastid	55.26	40.91
Solyc07g008060.1.1	Tomato	cytosol	53.95	40.07
GSMUA_Achr10P...	Banana	mitochondrion	43.42	39.21
Os05t0112101-01	Rice	plasma membrane	49.34	38.73
KRH20132	Soybean	cytosol	51.32	38.24
TraesCS1A01G035100.1	Wheat	cytosol	51.32	37.99
TraesCS1D01G036500.1	Wheat	cytosol	50.88	37.54
GSMUA_Achr11P...	Banana	cytosol	42.76	37.5
TraesCS1B01G044800.1	Wheat	cytosol	50.66	37.38
HORVU1Hr1G005290.1	Barley	cytosol	49.78	36.73
GSMUA_Achr6P18600_001	Banana	cytosol, mitochondrion	42.32	36.35
CDX76977	Canola	cytosol	40.35	35.25
Zm00001d035652_P001	Maize	cytosol	46.05	35.18
EES18894	Sorghum	cytosol	47.59	34.83
CDX76760	Canola	cytosol	33.99	33.19
GSMUA_Achr2P18700_001	Banana	cytosol	28.51	25.95
GSMUA_Achr4P13420_001	Banana	cytosol	29.82	25.47
GSMUA_Achr7P02300_001	Banana	plastid	27.41	24.75
GSMUA_Achr4P05920_001	Banana	cytosol	29.61	24.64
GSMUA_Achr1P15690_001	Banana	cytosol	30.04	24.51
GSMUA_Achr9P21890_001	Banana	cytosol	30.04	24.46
GSMUA_Achr7P04960_001	Banana	cytosol	29.39	24.36
GSMUA_Achr4P20660_001	Banana	cytosol	29.61	24.24
GSMUA_Achr6P03060_001	Banana	cytosol	28.95	24.13
GSMUA_Achr5P23570_001	Banana	cytosol	28.73	24.04
GSMUA_Achr3P05590_001	Banana	cytosol	27.19	22.71
GSMUA_Achr7P18620_001	Banana	mitochondrion	16.01	18.81
GSMUA_Achr7P02390_001	Banana	cytosol	16.67	18.27
GSMUA_Achr8P22890_001	Banana	mitochondrion	14.91	17.13
GSMUA_Achr3P20230_001	Banana	mitochondrion	12.28	16.92

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:35.1	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2	InterPro:ENTH
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	EnsemblPlantsGene:GSMUA_Achr11G24410_001
EnsemblPlants:GSMUA_Achr11P24410_001	EnsemblPlants:GSMUA_Achr11T24410_001	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	UniProt:M0RV21
PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF13	SMART:SM00273	SUPFAM:SSF48464
SUPFAM:SSF89009	UniParc:UPI000294EE3C	SEG:seg	:	:	:

Description

Putative clathrin assembly protein At2g25430 [Source:GMGC_GENE;Acc:GSMUA_Achr11G24410_001]

Coordinates

chr11:-:23965975..23967946

Molecular Weight (calculated)

50488.9 Da

IEP (calculated)

4.722

GRAVY (calculated)

-0.327

Length

456 amino acids

Sequence
(BLAST)

001: MAPSIRKALG AVKDQTSIGL AMMSSNVAPE LDVAIVKATS HDDEPADEKY LREILNMTSY SGSYVIACVA SVSRRLAKTR DWVVALKALM LVHRLLTDGD
101: PAFQHEILYA NRRGARLLCM SHFCDEAHSN SWDHSTFVRT YALYLDRRLG WMGYETKRGG GNQRSPLPDP YAYGNYGMKP ESVLGRMHEL LNVLDSFLGC
201: RPRGNAQHSR IILVALYPLL SESFQLYADI ADVLAILLDG FFDMDYHDCV ERITDKLLEL LEEFTRNRAT RTRSPPRVAL PAAPTETRDE EPEETMNSIK
301: ALPAPPDYEE EAPEPAKVAA EPVEQQGDLV DLRDDSAAAV DNLELALFQA PVAANGSDAE RGKADWEMML TIGQDPFAAS LSIPPPPFVQ IADAEKKRQL
401: LLQEQVMWQQ YAGDGMQGQA GLANKPNSNF VPNPAMPYGM PSAFDGTAGG YYYPTH

Best Arabidopsis Sequence Match ( AT2G25430.1 )
(BLAST)

001: MAPSIRKAIG AVKDQTSIGI AKVASNMAPD LEVAIVKATS HDDDPASEKY IREILNLTSL SRGYILACVT SVSRRLSKTR DWVVALKALM LVHRLLNEGD
101: PIFQEEILYS TRRGTRMLNM SDFRDEAHSS SWDHSAFVRT YAGYLDQRLE LALFERKSGV SVNSGGNSSH HSNNDDRYGR GRDDFRSPPP RSYDYENGGG
201: GGSDFRGDNN GYGGVPKRSR SYGDMTEMGG GGGGGGRDEK KVVTPLREMT PERIFGKMGH LQRLLDRFLS LRPTGLAKNS RMILIALYPV VRESFKLYAD
301: ICEVLAVLLD KFFDMEYSDC VKAFDAYASA AKQIDELIAF YNWCKETGVA RSSEYPEVQR ITSKLLETLE EFVRDRAKRG KSPERKEIEA PPPVVEEEEP
401: EPDMNEIKAL PPPENYTPPP PPEPEPQPEK PQFTEDLVNL REDEVTADDQ GNKFALALFA GPPGNNGKWE AFSSNGVTSA WQNPAAEPGK ADWELALVET
501: TSNLEKQTAA LGGGFDNLLL NGMYDQGMVR QHVSTSQLTG GSASSVALPL PGKTNNQVLA LPAPDGTVEK VNQDPFAASL TIPPPSYVQM AEMEKKQYLL
601: SQEQQLWQQY QRDGMRGQAS LAKMNTGPVP AYGMPPVNGM GPPPTGYYYN NPY

Arabidopsis Description

Putative clathrin assembly protein At2g25430 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF20]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.