Factsheet for Zm00001d035652_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18894	Sorghum	cytosol	83.08	79.61
TraesCS1D01G036500.1	Wheat	cytosol	64.49	62.3
TraesCS1B01G044800.1	Wheat	cytosol	64.32	62.14
TraesCS1A01G035100.1	Wheat	cytosol	63.99	62.01
Os05t0112101-01	Rice	plasma membrane	59.8	61.45
HORVU1Hr1G005290.1	Barley	cytosol	63.15	61.0
Zm00001d030399_P001	Maize	cytosol	30.15	51.43
Zm00001d046121_P001	Maize	cytosol	30.65	50.41
Zm00001d028620_P001	Maize	plasma membrane	52.93	49.45
Zm00001d047804_P001	Maize	plasma membrane	52.43	49.37
CDX76976	Canola	cytosol	48.41	48.74
CDY35361	Canola	cytosol	48.24	48.73
CDY11530	Canola	cytosol	47.07	48.45
CDX68831	Canola	cytosol	47.4	47.88
CDX75232	Canola	cytosol	47.4	47.72
GSMUA_Achr9P03950_001	Banana	cytosol, mitochondrion, plastid	41.71	47.25
PGSC0003DMT400079380	Potato	cytosol, mitochondrion, plastid	47.91	46.43
KRH52429	Soybean	endoplasmic reticulum	49.58	46.18
Bra007800.1-P	Field mustard	cytosol	47.4	46.17
KRH61760	Soybean	mitochondrion	50.42	46.17
GSMUA_Achr11P...	Banana	cytosol	35.18	46.05
Solyc07g008060.1.1	Tomato	cytosol	47.07	45.77
KRH20132	Soybean	cytosol	46.73	45.59
VIT_11s0016g05480.t01	Wine grape	cytosol	48.24	45.5
Bra011333.1-P	Field mustard	cytosol	47.74	45.45
PGSC0003DMT400040963	Potato	cytosol	48.74	45.4
PGSC0003DMT400035762	Potato	cytosol	48.58	45.38
Solyc08g059660.1.1	Tomato	cytosol	48.07	45.13
AT4G32285.2	Thale cress	cytosol	47.57	44.72
Bra034252.1-P	Field mustard	cytosol	48.58	44.68
CDX76760	Canola	cytosol	34.67	44.33
Solyc06g011450.1.1	Tomato	cytosol	45.56	44.3
AT2G25430.1	Thale cress	cytosol	48.41	44.26
CDX76977	Canola	cytosol	38.69	44.25
VIT_04s0008g05540.t01	Wine grape	cytosol	48.58	43.74
GSMUA_Achr6P33420_001	Banana	cytosol, mitochondrion, plastid	39.87	37.66
KRH05593	Soybean	cytosol	5.03	34.88
Zm00001d012220_P001	Maize	cytosol, mitochondrion, nucleus, plastid	32.33	34.77
Zm00001d010228_P001	Maize	cytosol	35.18	34.15
Zm00001d038892_P001	Maize	mitochondrion	27.64	29.31
Zm00001d036672_P005	Maize	cytosol	27.14	28.17
Zm00001d037484_P002	Maize	cytosol, mitochondrion	25.8	27.95
Zm00001d009452_P007	Maize	cytosol, mitochondrion, plastid	26.63	27.32
Zm00001d015430_P001	Maize	cytosol	24.96	25.82
Zm00001d045154_P002	Maize	mitochondrion	25.46	25.42
Zm00001d052008_P003	Maize	cytosol	23.28	25.14
Zm00001d047867_P001	Maize	cytosol	13.74	24.92
Zm00001d049990_P001	Maize	mitochondrion	16.08	24.74
Zm00001d043773_P003	Maize	cytosol	25.29	24.08
Zm00001d005869_P001	Maize	mitochondrion	14.91	22.36
Zm00001d007272_P001	Maize	mitochondrion	13.74	20.76
Zm00001d031760_P001	Maize	mitochondrion	16.58	20.12
Zm00001d049002_P001	Maize	mitochondrion	13.57	20.0

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	EntrezGene:100382192	MapMan:35.1	InterPro:ANTH_dom	ProteinID:AQK79396.1
EMBL:BT063464	UniProt:C0P595	InterPro:Clathrin_AP_dom2	InterPro:ENTH	InterPro:ENTH_VHS	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987	GO:GO:0016043
GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712
PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF23	SMART:SM00273	SUPFAM:SSF48464
SUPFAM:SSF89009	UniParc:UPI0001948F4F	EnsemblPlantsGene:Zm00001d035652	EnsemblPlants:Zm00001d035652_P001	EnsemblPlants:Zm00001d035652_T001	SEG:seg

Description

Putative clathrin assembly protein

Coordinates

chr6:+:38761353..38763146

Molecular Weight (calculated)

63481.4 Da

IEP (calculated)

6.244

GRAVY (calculated)

-0.151

Length

597 amino acids

Sequence
(BLAST)

001: MSIRKALGAV KDHATIGIAR VTGAVAPDLD VAIVRATSHD DAPPDERHAR EVLRLASATG AAPACIASLA RRLSRTRDYV VAAKCLSLLQ RLASAEGDVE
101: GGAGTRPFLH ELLRPAVSGR RAGEPVLALL LDFRDDAHPG SWDHSAFVRA YATYLLDRVR FLVLLLPAPP RFSDGRVAPG PPQAPADDMD AEALLGRARH
201: LRHLLDRLLA CRPAGAAGAS RVVRAALHPM LRDSFRVYED VALLLALLLD RFFDMDYSDC VKAFETYVGT AKQIDALRAF YAWCEDAGIA RSSDFPDVKR
301: VDDKLLETME QFLRERGRAG RAWASPPAPS RLAHQPDANA QGDDGHVDGM NSIKVLPAPS TRSIGAEPAT PRPAEEASQS DLVDLRETAA TADEEGNKLA
401: LALFSAPPAT NGSWVTFPSG PDAAPEPAVT SAWHTPAAEP RNADWELALV ETASNLSKQA ASLGGGMDTL LLGGMYDHGA VRRQVAAPGS ASSMALLPGH
501: QVAPVLMLLG PDGSTARQVA GGDPFAASLA VPPPSYVQMA EMERKQQLLV QEQQMWAQYR HGGMQGQPAG FNNGLAGGSV FAPNAAMAVP YGGYGYY

Best Arabidopsis Sequence Match ( AT4G32285.2 )
(BLAST)

001: MALSMRKAIG VVKDQTSIGI AKVASNMAPD LEVAIVKATS HDDDQSSDKY IREILSLTSL SRGYVHACVT SVSRRLKKTR DWIVALKALM LVHRLLNEGD
101: PLFQEEILYA TRRGTRILNM SDFRDEAHSS SWDHSAFVRT YASYLDQRLE LALFERRGRN GGGSSSSHQS NGDDGYNRSR DDFRSPPPRT YDYETGNGFG
201: MPKRSRSFGD VNEIGAREEK KSVTPLREMT PERIFGKMGH LQRLLDRFLS CRPTGLAKNS RMILIAMYPV VKESFRLYAD ICEVLAVLLD KFFDMEYTDC
301: VKAFDAYASA AKQIDELIAF YHWCKDTGVA RSSEYPEVQR ITSKLLETLE EFVRDRAKRA KSPERKEIEA PPAPAPPVEE PVDMNEIKAL PPPENHTPPP
401: PPAPEPKPQQ PQVTDDLVNL REDDVSGDDQ GNKFALALFA GPPANNGKWE AFSSDNNVTS AWQNPAAELG KADWELALVE TASNLEHQKA AMGGGLDPLL
501: LNGMYDQGAV RQHVSTSELT GGSSSSVALP LPGKVNSHIL ALPAPDGTVQ KVNQDPFAAS LTIPPPSYVQ MAEMDKKQYL LTQEQQLWQQ YQQEGMRGQA
601: SLAKMNTAQT AMPYGMPPVN GMGPSPMGYY YNNPY

Arabidopsis Description

Probable clathrin assembly protein At4g32285 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9J8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.