Factsheet for Solyc07g008060.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079380	Potato	cytosol, mitochondrion, plastid	95.77	95.45
VIT_11s0016g05480.t01	Wine grape	cytosol	69.38	67.3
KRH20132	Soybean	cytosol	63.84	64.05
Solyc08g059660.1.1	Tomato	cytosol	64.17	61.95
TraesCS4D01G208100.1	Wheat	cytosol, mitochondrion, plastid	56.19	61.61
Solyc06g011450.1.1	Tomato	cytosol	60.42	60.42
Zm00001d030399_P001	Maize	cytosol	33.88	59.43
Zm00001d047804_P001	Maize	plasma membrane	60.26	58.36
EER92480	Sorghum	cytosol, mitochondrion, plastid	61.24	58.29
Zm00001d028620_P001	Maize	plasma membrane	60.59	58.22
Zm00001d046121_P001	Maize	cytosol	34.36	58.13
GSMUA_Achr9P03950_001	Banana	cytosol, mitochondrion, plastid	49.19	57.31
TraesCS4B01G207200.1	Wheat	cytosol, mitochondrion, plastid	59.45	57.21
TraesCS4A01G097200.1	Wheat	cytosol, mitochondrion, plastid	59.45	57.21
Os03t0275500-01	Rice	plasma membrane	60.42	56.99
HORVU4Hr1G059660.3	Barley	cytosol, mitochondrion, plastid	59.12	56.19
GSMUA_Achr11P...	Banana	cytosol	40.07	53.95
Os05t0112101-01	Rice	plasma membrane	48.7	51.46
TraesCS1A01G035100.1	Wheat	cytosol	51.3	51.14
TraesCS1D01G036500.1	Wheat	cytosol	51.3	50.97
TraesCS1B01G044800.1	Wheat	cytosol	51.3	50.97
HORVU1Hr1G005290.1	Barley	cytosol	50.81	50.49
Zm00001d035652_P001	Maize	cytosol	45.77	47.07
EES18894	Sorghum	cytosol	47.23	46.55
Solyc01g104870.2.1	Tomato	cytosol, mitochondrion	43.97	46.47
GSMUA_Achr6P33420_001	Banana	cytosol, mitochondrion, plastid	47.39	46.04
Solyc11g044860.1.1	Tomato	cytosol	34.36	42.2
Solyc12g017440.1.1	Tomato	cytosol	15.8	32.44
Solyc04g007860.2.1	Tomato	cytosol, plastid	26.87	29.31
Solyc07g007820.2.1	Tomato	cytosol	26.55	28.95
Solyc02g043810.2.1	Tomato	cytosol	26.55	28.2
Solyc12g017430.1.1	Tomato	nucleus	8.96	25.94
Solyc01g005170.1.1	Tomato	cytosol, mitochondrion, plastid	16.78	24.88
Solyc12g006000.1.1	Tomato	cytosol	28.34	23.9
Solyc04g008350.1.1	Tomato	mitochondrion	14.82	23.16
Solyc07g049380.1.1	Tomato	cytosol	27.85	23.01
Solyc01g005070.2.1	Tomato	mitochondrion	14.66	22.61
Solyc12g010530.1.1	Tomato	cytosol	20.68	21.38

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.4.6	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2	InterPro:ENTH
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	InterPro:IPR008942
InterPro:IPR013809	InterPro:IPR014712	UniProt:K4CBS5	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951
PANTHER:PTHR22951:SF27	SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	EnsemblPlantsGene:Solyc07g008060.1	EnsemblPlants:Solyc07g008060.1.1
UniParc:UPI000276B1F4	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7:+:2772065..2773909

Molecular Weight (calculated)

67210.7 Da

IEP (calculated)

5.426

GRAVY (calculated)

-0.386

Length

614 amino acids

Sequence
(BLAST)

001: MSIRKAIGAV KDQTSISLAK VTGNVAPDLE VLVVKATTHD NDPADEKYIR EILHLTSNSR GYVSAFVFAV SKRLSKTHDW VVALKALVLV HRLLTDGDPV
101: IGQEIMYASR KGMRVLNMSG FRDEAHSNSW DHSGFVRTYA IYLDQKLEFS TYGRKLNDVD GYGQYRSEGN GMDRRKRFSN EPDESAGREE KSGATPVREM
201: KPEKVLERLN QLLQLLDRFL ACRPTGAAKN SRMVLATLYS LVNESFKLYA DICEVLQILL DRFAEMEYAD CVKTFDAYVS AAKMIDELVG TYNWCKDVGI
301: ARSSEFPEVQ VITDKLLGTL EGFLRERANR PRSPEINRVE RASAVIEENA PDMNEIKALP PPENHTPPPP APPQSVPQPR PHAQQVTEDL VNLKDDGVTA
401: DGEGNKMALA LFSGPVAKGS GSWEAFPSDG ETGQVTSAWQ TPAAEIGKAD WELALVETAS NLSKQTADLA GGFDSLLLNG MYDQGTVRQH VSNTQVTGGS
501: ASSVALPGVG KTATPMLALP APDGTVQPVR NQDPFAASLA VPPPSYVQMA EQERKQHLLM QEQQLWQQYA SNGMQGQMGL SRLAGATPGY YGAGMQPSMP
601: YGMGQPAGYY FTPL

Best Arabidopsis Sequence Match ( AT2G25430.1 )
(BLAST)

001: MAPSIRKAIG AVKDQTSIGI AKVASNMAPD LEVAIVKATS HDDDPASEKY IREILNLTSL SRGYILACVT SVSRRLSKTR DWVVALKALM LVHRLLNEGD
101: PIFQEEILYS TRRGTRMLNM SDFRDEAHSS SWDHSAFVRT YAGYLDQRLE LALFERKSGV SVNSGGNSSH HSNNDDRYGR GRDDFRSPPP RSYDYENGGG
201: GGSDFRGDNN GYGGVPKRSR SYGDMTEMGG GGGGGGRDEK KVVTPLREMT PERIFGKMGH LQRLLDRFLS LRPTGLAKNS RMILIALYPV VRESFKLYAD
301: ICEVLAVLLD KFFDMEYSDC VKAFDAYASA AKQIDELIAF YNWCKETGVA RSSEYPEVQR ITSKLLETLE EFVRDRAKRG KSPERKEIEA PPPVVEEEEP
401: EPDMNEIKAL PPPENYTPPP PPEPEPQPEK PQFTEDLVNL REDEVTADDQ GNKFALALFA GPPGNNGKWE AFSSNGVTSA WQNPAAEPGK ADWELALVET
501: TSNLEKQTAA LGGGFDNLLL NGMYDQGMVR QHVSTSQLTG GSASSVALPL PGKTNNQVLA LPAPDGTVEK VNQDPFAASL TIPPPSYVQM AEMEKKQYLL
601: SQEQQLWQQY QRDGMRGQAS LAKMNTGPVP AYGMPPVNGM GPPPTGYYYN NPY

Arabidopsis Description

Putative clathrin assembly protein At2g25430 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF20]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.